PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca23634.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 482aa MW: 53574.6 Da PI: 6.7181

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca23634.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.3e-09	306	353	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +Le+ ++Y++sLq Dca23634.1 306 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLEEIINYVQSLQ 353 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.49E-9	300	357	No hit	No description
SuperFamily	SSF47459	1.7E-16	300	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.396	302	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-16	302	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-6	306	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-10	308	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MDKNFFMDSS IAHQLQHDHP FSFDFFLDTQ RPHDHFDSEL SSMVSSPTSN SAISTDNFMI 60 SELIGKIGNI CNTSSLPNYI NSGNCSTNNS CYNTPLNSPP KIGKSTPNID HMVNENFSSL 120 GNLPAMPGGP GFAERAAKFS SFGSKSFNGR TGSSQFGSSN VNQNGNLGGE NGKLHRVCST 180 PLLDVEVTRS KIEVKKLENF VNDHQKVELS NNLENSSIST QIQVKENGSS RKRKATNVKG 240 KEKEKEIGCL NKVSENGDEA NAKRSKGGET TKLEENKGGE EDEKKNSEPF KDYIHVRARR 300 GQATDSHSLA ERVRREKIGE RMKLLQDLVP GCNKVTGKAL MLEEIINYVQ SLQRQVEFLS 360 MKLSNVNPRL ETSMSNSFLK DDNEPNCSME HPMYQTLYGQ PQQNNAQDTM QYSMDPFNPL 420 LNHNHSLHSS LIDGFSNYLS QLPSLCEGDL QSIVHMGFGQ KDNGFHAQTL PGTNQAQMKI 480 EF

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MDKNFFMDSS IAHQLQHDHP FSFDFFLDTQ RPHDHFDSEL SSMVSSPTSN SAISTDNFMI  60
SELIGKIGNI CNTSSLPNYI NSGNCSTNNS CYNTPLNSPP KIGKSTPNID HMVNENFSSL  120
GNLPAMPGGP GFAERAAKFS SFGSKSFNGR TGSSQFGSSN VNQNGNLGGE NGKLHRVCST  180
PLLDVEVTRS KIEVKKLENF VNDHQKVELS NNLENSSIST QIQVKENGSS RKRKATNVKG  240
KEKEKEIGCL NKVSENGDEA NAKRSKGGET TKLEENKGGE EDEKKNSEPF KDYIHVRARR  300
GQATDSHSLA ERVRREKIGE RMKLLQDLVP GCNKVTGKAL MLEEIINYVQ SLQRQVEFLS  360
MKLSNVNPRL ETSMSNSFLK DDNEPNCSME HPMYQTLYGQ PQQNNAQDTM QYSMDPFNPL  420
LNHNHSLHSS LIDGFSNYLS QLPSLCEGDL QSIVHMGFGQ KDNGFHAQTL PGTNQAQMKI  480
EF

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685111.1	1e-171	PREDICTED: transcription factor bHLH78
TrEMBL	A0A0J8C085	1e-169	A0A0J8C085_BETVU; Uncharacterized protein
STRING	XP_010685111.1	1e-170	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-71	bHLH family protein