PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca23866.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 239aa    MW: 27506.8 Da    PI: 6.1007
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca23866.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.41.3e-0975157790
        FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 A+ +GF + ks++k +   g+   +   C++ gk +   k+  ++++r+++++++++C  k+k+    +gk+ v+ +   HnHel+
  Dca23866.1  75 AHGLGFGLWKSSNKPK---GTREYHLIECNRGGKYKGPFKDpsRVSKRKKTTSKKIECLFKIKIVSGANGKFAVKPMYGFHNHELM 157
                 8889999999988777...555688899******9988877778999*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-775157IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSFIGDDEFN DDDYNDGDYE VDDGDYEVDD QSALGDDNIS VDALLGDEID YSIHFLNTLC  60
FDNVESAYTW AQFIAHGLGF GLWKSSNKPK GTREYHLIEC NRGGKYKGPF KDPSRVSKRK  120
KTTSKKIECL FKIKIVSGAN GKFAVKPMYG FHNHELMKHF DDHRQMTSFS DEQKEYVRVN  180
VVSEIKTAII RLGFKEKYPD QPQPNKRQFD SVVAKVRLEE MSGRTHVQQM CNNLVFSRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-