PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca23924.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 379aa    MW: 43116.3 Da    PI: 9.0446
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca23924.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.24.8e-17256365291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......................tekerrtraetrtgCkaklkvkkekdgkwev 78 
                 f ++YA  +GF+ r  +++  k+n+ i ++++ C ++g++e++++                       +++ +r+++ tr+gCka++++    d+ +++
  Dca23924.1 256 FCKTYALACGFEYRLGTQRMFKDNT-IRRKDLLCHRQGFNESKRNClsvssetresseiaapknrkkqKKEIQRNTKITRVGCKAMIRIMFL-DKMYVI 352
                 789***************9996666.***************998889****************9988777778899*************999.9***** PP

        FAR1  79 tkleleHnHelap 91 
                 +++++ HnH+l++
  Dca23924.1 353 ERFKEAHNHKLCS 365
                 ***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM001984.3E-5129162IPR014044CAP domain
CDDcd053812.43E-6831157No hitNo description
Gene3DG3DSA:3.40.33.105.0E-4232158IPR014044CAP domain
SuperFamilySSF557971.83E-4235157IPR014044CAP domain
PfamPF001884.4E-2538154IPR014044CAP domain
PRINTSPR008374.7E-125068IPR001283Cysteine-rich secretory protein, allergen V5/Tpx-1-related
PRINTSPR008381.2E-65068IPR002413Ves allergen
PRINTSPR008381.2E-695110IPR002413Ves allergen
PRINTSPR008374.7E-1297110IPR001283Cysteine-rich secretory protein, allergen V5/Tpx-1-related
PRINTSPR008381.2E-6119138IPR002413Ves allergen
PRINTSPR008374.7E-12120136IPR001283Cysteine-rich secretory protein, allergen V5/Tpx-1-related
PROSITE patternPS010090121131IPR018244Allergen V5/Tpx-1-related, conserved site
PRINTSPR008374.7E-12149162IPR001283Cysteine-rich secretory protein, allergen V5/Tpx-1-related
PfamPF031013.7E-14256364IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005576Cellular Componentextracellular region
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSYYYIKNYL KIVTFILIPL IFGEAHPEPN PSKWLIPHNA ARQLVGVPPL KWDPKLARVA  60
KKYANDRKKD CKLIHSNEPY GENLYWGSSS SSTPSQAVAG WVSEKRGYNV GSNTCRIADC  120
GHYTQVVWRS TTAVGCAKVV CNGGRGGAFF VCEYNPPDLL PMEEEQQQEQ QYQEELIEGS  180
DSLTDLDISA NVNEVTNQNG VPVTPTVPTD AYESMTTPVL PQYTPNGSEE WIRKIEKKIT  240
PTVGKKFYTV EEAVDFCKTY ALACGFEYRL GTQRMFKDNT IRRKDLLCHR QGFNESKRNC  300
LSVSSETRES SEIAAPKNRK KQKKEIQRNT KITRVGCKAM IRIMFLDKMY VIERFKEAHN  360
HKLCSAKHQM FSKQAANLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cfe_A6e-25281561125PATHOGENESIS-RELATED PROTEIN P14A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-08FAR1-related sequence 5