PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca24325.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

SRS

Protein Properties

Length: 390aa MW: 42628.6 Da PI: 7.7505

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca24325.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	216.1	7.8e-67	146	303	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrer.qqqlaaasskaaasaaeaaskrkrelkskkqs...alsstklssaes. 96 +g+++CqdCGnqakkdCah RC tCCksrgfdC thvkstWvpaakrrer qqqlaa++++++ + ++ +++++++++++q+ +l +++l ++ + Dca24325.1 146 VGGMNCQDCGNQAKKDCAHLRCSTCCKSRGFDCPTHVKSTWVPAAKRRERhQQQLAALHHHSSPDDHHTPPQQQQQQQNQQQQqlmNLREKRLREHRTg 244 6899********************************************6667777766666655544444444443333330003444555555441 PP DUF702 97 .kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ le s++P+e +++a+frcv+vs++dd ee++aYqtav+igGhvfkGiLydqG+e+ Dca24325.1 245 aSTGLELSNFPPEFNTPALFRCVKVSAMDDPEEQYAYQTAVNIGGHVFKGILYDQGPEN 303 144566777**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.9E-62	148	302	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.5E-26	150	192	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.4E-25	254	301	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MATFFSLGTP GNNNEPNNSQ NPDPNNLNQV INPNPNPNPN QNPNQGVYEI YPKGSFEIWQ 60 QYVQVHHHHH APPHTKFHFH HTPPPPHFLL GEPSSSTHHN NNNLFYHTSN SNSNNNSNNS 120 GNNNNNNSSS RFYRQLGGGS GGSGSVGGMN CQDCGNQAKK DCAHLRCSTC CKSRGFDCPT 180 HVKSTWVPAA KRRERHQQQL AALHHHSSPD DHHTPPQQQQ QQQNQQQQQL MNLREKRLRE 240 HRTGASTGLE LSNFPPEFNT PALFRCVKVS AMDDPEEQYA YQTAVNIGGH VFKGILYDQG 300 PENRYGSGGS SIAGGGESSS VGAHHHQQNL MLTATTATTT VAMTTDLMGG VGGNVTTASL 360 LDPMAANAAV YPTPINAFLA GTQFFPPPRS

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MATFFSLGTP GNNNEPNNSQ NPDPNNLNQV INPNPNPNPN QNPNQGVYEI YPKGSFEIWQ  60
QYVQVHHHHH APPHTKFHFH HTPPPPHFLL GEPSSSTHHN NNNLFYHTSN SNSNNNSNNS  120
GNNNNNNSSS RFYRQLGGGS GGSGSVGGMN CQDCGNQAKK DCAHLRCSTC CKSRGFDCPT  180
HVKSTWVPAA KRRERHQQQL AALHHHSSPD DHHTPPQQQQ QQQNQQQQQL MNLREKRLRE  240
HRTGASTGLE LSNFPPEFNT PALFRCVKVS AMDDPEEQYA YQTAVNIGGH VFKGILYDQG  300
PENRYGSGGS SIAGGGESSS VGAHHHQQNL MLTATTATTT VAMTTDLMGG VGGNVTTASL  360
LDPMAANAAV YPTPINAFLA GTQFFPPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021862466.1	9e-86	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	3e-66	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A0K9R941	1e-84	A0A0K9R941_SPIOL; Uncharacterized protein
STRING	XP_010672367.1	4e-85	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-56	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]