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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Dca24334.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 324aa MW: 36455.4 Da PI: 9.0655 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Dca24334.1 | genome | DCA | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 373.6 | 3.3e-114 | 1 | 324 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa...aslkenlg.lqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla 92
md+ g+re r+k+ +y+pa +++ ++ +++ms++aerda+i+ern+a+ ek++a+ erd a +qrd+a++ern+a++erdn+++al++++ s++
Dca24334.1 1 MDEGGHREngRHKPdMYKPAhsqWLMQQPQSmKHIMSIMAERDAAIQERNMAINEKNKACEERDLAIMQRDTAIQERNEAIIERDNAMAALEFRQISAN 99
99****9999********7754333454444157***********************************************************999988 PP
GAGA_bind 93 ...salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.. 186
+++p+g+q+++g+k++++ ++l+ p+ +++++e e p+ ea++ + +++ k+++ k+pk +++++kk++ks +kvk+e++d +
Dca24334.1 100 gptNSCPPGCQISRGVKHMHHQHMLHSPHEGETSYE----ERDVPVPVPEAVPMTAVPAESVKSRKVKRPKDVDETSPNKKTAKSGRKVKREGEDLNki 194
899*********************999999999998....444668999999999999999999*****************************99556* PP
GAGA_bind 187 ...............skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLe 270
+k+++k dl+ln+v++Dest+P+PvCsCtG+ rqCYkWGnGGWqS+CCttt+S+yPLP+++++r+aR++grKmS++af+klL+
Dca24334.1 195 lfpksqdwqgmhdmgKKTDWKGSDLGLNQVAFDESTMPPPVCSCTGIYRQCYKWGNGGWQSSCCTTTMSMYPLPAVPNKRHARVGGRKMSGSAFSKLLS 293
*************************************************************************************************** PP
GAGA_bind 271 kLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+LaaeG+dls+pvDLkd WAkHGtn+++ti+
Dca24334.1 294 RLAAEGHDLSTPVDLKDNWAKHGTNRYITIK 324
******************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MDEGGHRENG RHKPDMYKPA HSQWLMQQPQ SMKHIMSIMA ERDAAIQERN MAINEKNKAC 60
EERDLAIMQR DTAIQERNEA IIERDNAMAA LEFRQISANG PTNSCPPGCQ ISRGVKHMHH 120
QHMLHSPHEG ETSYEERDVP VPVPEAVPMT AVPAESVKSR KVKRPKDVDE TSPNKKTAKS 180
GRKVKREGED LNKILFPKSQ DWQGMHDMGK KTDWKGSDLG LNQVAFDEST MPPPVCSCTG 240
IYRQCYKWGN GGWQSSCCTT TMSMYPLPAV PNKRHARVGG RKMSGSAFSK LLSRLAAEGH 300
DLSTPVDLKD NWAKHGTNRY ITIK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
