PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca24347.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 285aa MW: 31523 Da PI: 4.6208

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca24347.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.8	3.8e-11	72	113	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT +E +ll++a + + + W+ Ia ++g +++ qc+ +++ Dca24347.1 72 SWTDQETLLLLEALEIYNDN-WNDIADHVG-TKSKSQCIIHFLR 113 7**************977.*****.******99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	22.83	68	119	IPR017884	SANT domain
SMART	SM00717	8.4E-11	69	117	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.72E-13	70	120	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-6	72	110	IPR009057	Homeodomain-like
Pfam	PF00249	6.1E-11	72	114	IPR001005	SANT/Myb domain
CDD	cd00167	0.00261	90	114	No hit	No description
Pfam	PF16495	1.1E-8	254	285	IPR032451	SMARCC, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MVVKNFCRYN VRIESFGFVT YQCREFSPQL FLADTLLCPD CYHDGRLVIG HSSMDFTKLD 60 TTTEYGDQDG DSWTDQETLL LLEALEIYND NWNDIADHVG TKSKSQCIIH FLRLPMEDGL 120 FENLEVPCSS GPSNKSNAAD NGNMHANANG HHGQDSDYEN RFPFTTSENP VMSLVAFLAS 180 AVGPRIAAAC AHACLAALTE DEGSLYINRV DSDTRHVEAG NYCQQREESS CTQGSRNLEG 240 SPIPCERVYS AAKAGLAAAA VKAKLFADHE EREIQRLSAI IVNHQ

Functional Description ? help Back to Top
Source	Description
UniProt	Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. {ECO:0000269\|PubMed:14682613, ECO:0000269\|PubMed:16055636}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023645193.1	2e-90	SWI/SNF complex subunit SWI3C isoform X1
Swissprot	Q9XI07	5e-87	SWI3C_ARATH; SWI/SNF complex subunit SWI3C
TrEMBL	R0IIL6	7e-89	R0IIL6_9BRAS; Uncharacterized protein (Fragment)
STRING	Bostr.12659s0020.1.p	2e-90	(Boechera stricta)

Publications ? help Back to Top
Sarnowski TJ,Swiezewski S,Pawlikowska K,Kaczanowski S,Jerzmanowski A AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time. Nucleic Acids Res., 2002. 30(15): p. 3412-21 [PMID:12140326] Zhou C,Miki B,Wu K CHB2, a member of the SWI3 gene family, is a global regulator in Arabidopsis. Plant Mol. Biol., 2003. 52(6): p. 1125-34 [PMID:14682613] Sarnowski TJ, et al. SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development. Plant Cell, 2005. 17(9): p. 2454-72 [PMID:16055636] Archacki R, et al. Genetic analysis of functional redundancy of BRM ATPase and ATSWI3C subunits of Arabidopsis SWI/SNF chromatin remodelling complexes. Planta, 2009. 229(6): p. 1281-92 [PMID:19301030] Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518] Liu ZW, et al. Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in Arabidopsis. PLoS Genet., 2016. 12(5): p. e1006026 [PMID:27171427]