PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca24376.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 690aa MW: 79020.6 Da PI: 7.6191

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca24376.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.4	9.2e-08	91	184	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f +YA + GF+v ++++ + + + t +C gk+e + + + ++r+++++ tgCka ++ + d+ ++++++leHnHel Dca24376.1 91 FIISYALKKGFEVFTRSNALKAEFR-NAGVTRKCG--GKKEARYHMmerlrlackKGGRKRSEKSNVTGCKAYFEGAIQ-DDGSVIKTVHLEHNHELD 184 5568*******999887773322.334444554..44444333344789999777888899999*****9999.77789*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-5	91	185	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.7E-13	247	307	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.546	479	515	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.7E-6	479	508	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.5E-4	490	517	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MSSNNDGWFD LNEYYDEEFG GSEGYVEEIE ENDTQLNNND SGANSIDELV LAEGSPNPVE 60 PPGNAVEGAN DDIGDPTVGM VFPNCDSFAE FIISYALKKG FEVFTRSNAL KAEFRNAGVT 120 RKCGGKKEAR YHMMERLRLA CKKGGRKRSE KSNVTGCKAY FEGAIQDDGS VIKTVHLEHN 180 HELDPANSRF KVSARTITDY FKERIVLNDR AGIPITKNFN AMVIEAGGHE NLPFNHRDLR 240 NLVNLERMSC PFSPFIGVNH HGNSICFAAA LITNEDTETF IWVFERWLEC MGKAPPVILS 300 DQDKAIAVVH DTLSEEDFEQ GWKVMVDKFG LQENVWIKES YNIRRRWVPA YWRGTFCAGM 360 SSTQRSEQSN RFFKVRVSLE TGLRSFMTQF DLAQQSKVED EKTQKFICKD RPLPYDKSVV 420 VEEVFSKLYT NEKFKEVKEQ VYAGICTFIS LVMRMGSYVV YKAEEQIVQP FWKEGFRTYD 480 VSLDKDVGVY KCSCQLFEFK GILCKHIIQC MVKENIKSIP DRYILDRWRK DLIRGYEHIR 540 VGYYNPEEVE SVKRAVKVKN KTAYIEKLSL HNDETFAKFE QVADDLVKDL ENIVGIETVR 600 STLDANGISK VVGKRRVQPR ECNMRHIART MPQRLDSQLK DPVDKRGIGR GPKPKQTSTS 660 KPRRKRVGGD LQQSPLSQRS RTSSEIDLFR

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MSSNNDGWFD LNEYYDEEFG GSEGYVEEIE ENDTQLNNND SGANSIDELV LAEGSPNPVE  60
PPGNAVEGAN DDIGDPTVGM VFPNCDSFAE FIISYALKKG FEVFTRSNAL KAEFRNAGVT  120
RKCGGKKEAR YHMMERLRLA CKKGGRKRSE KSNVTGCKAY FEGAIQDDGS VIKTVHLEHN  180
HELDPANSRF KVSARTITDY FKERIVLNDR AGIPITKNFN AMVIEAGGHE NLPFNHRDLR  240
NLVNLERMSC PFSPFIGVNH HGNSICFAAA LITNEDTETF IWVFERWLEC MGKAPPVILS  300
DQDKAIAVVH DTLSEEDFEQ GWKVMVDKFG LQENVWIKES YNIRRRWVPA YWRGTFCAGM  360
SSTQRSEQSN RFFKVRVSLE TGLRSFMTQF DLAQQSKVED EKTQKFICKD RPLPYDKSVV  420
VEEVFSKLYT NEKFKEVKEQ VYAGICTFIS LVMRMGSYVV YKAEEQIVQP FWKEGFRTYD  480
VSLDKDVGVY KCSCQLFEFK GILCKHIIQC MVKENIKSIP DRYILDRWRK DLIRGYEHIR  540
VGYYNPEEVE SVKRAVKVKN KTAYIEKLSL HNDETFAKFE QVADDLVKDL ENIVGIETVR  600
STLDANGISK VVGKRRVQPR ECNMRHIART MPQRLDSQLK DPVDKRGIGR GPKPKQTSTS  660
KPRRKRVGGD LQQSPLSQRS RTSSEIDLFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-47	FAR1-related sequence 5