PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca244.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 354aa    MW: 38141.2 Da    PI: 6.4114
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca244.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64.1e-31173231259
               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
               +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dpk++++tY++eHnh+
  Dca244.1 173 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRTDPKMFIVTYTSEHNHP 231
               79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081135.083167233IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-31167233IPR003657WRKY domain
SuperFamilySSF1182901.96E-26170233IPR003657WRKY domain
SMARTSM007741.5E-37172232IPR003657WRKY domain
PfamPF031064.7E-26174231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEGPPDWDLL AVVRSCSSTT TTATTTAPAA ADPHPPPPQL PPPPPQRQQQ QQLCFSPTTS  60
ACTSSSSVLF GFSTALSNTS TSFYSDLQDI CKPLICSLNS SSATLSPPIS SSSLSLSQFR  120
HVVKPSHVVF GGSSTALSNT STSSSTTSHS QRAKKRKNLM KKVCHVPAEG LSSDMWAWRK  180
YGQKPIKGSP YPRGYYRCSS SKGCLARKQV ERNRTDPKMF IVTYTSEHNH PMPTHRNSLA  240
GSTRQKTTTT PPEHPPCSSP SATTAATTLS PLTEPSESKT EGDDMMMTKD DEYDDDDMRE  300
LSDLMLSDDF YVGFEQIDGG SDDSDCFSEQ FSPSSSEFPW LSNGGSTATA AGGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-23160234580Disease resistance protein RRS1
5w3x_D4e-23160234580Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021767146.11e-120WRKY transcription factor 22-like
TrEMBLA0A0K9RJ461e-107A0A0K9RJ46_SPIOL; Uncharacterized protein
STRINGXP_010669828.11e-111(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.16e-57WRKY family protein