PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca24506.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 161aa    MW: 18485.9 Da    PI: 7.9727
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca24506.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.64.8e-0963144789
        FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                 A+ +GF ++ks++k +   g+   +  +C + gk +   k+  ++ +r+++++++++C  k+++   +dgk+ v+ +   HnHe+
  Dca24506.1  63 AHGLGFGLCKSSNKPR---GTREYHLIRCERGGKYNGPFKDplKVPKRKKTTNKKIECPFKINIVSGTDGKFAVMPMYGFHNHEM 144
                 8899******998877...555688899******999888888999*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-663144IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MSTTGDDDFN DGDYEGDDQS DLGDDNISVD QLIGDGIDYS FHFMNILCFQ NMKMAYTWAQ  60
AIAHGLGFGL CKSSNKPRGT REYHLIRCER GGKYNGPFKD PLKVPKRKKT TNKKIECPFK  120
INIVSGTDGK FAVMPMYGFH NHEMGKFFYH YYKLEQKQRP L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-