PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca24575.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 206aa    MW: 24213.3 Da    PI: 8.6914
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca24575.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.36.9e-1062154790
        FAR1   7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle......leHnHela 90 
                 A e GF ++k+++ ++ +++ e   + f+Cs++g++++  +  ek +++  +++++C+ +++  +++   d+kw+v           +HnHel+
  Dca24575.1  62 AFENGFALVKATNGQKnRKQPELLASYFRCSRHGRSKSVYDP-EKPKKKPRTQKCDCEFRVRAVQNYnsiDNKWVVLWNIviskgfGNHNHELT 154
                 7789**9999887655488999**************999888.777777778889999888866665679999988643335666699****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-661154IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDSPEFCHLW LWTKHFIVLL WEDSPDSFED FRGDDVDYNP LFVTKVSFKD RDEAFDWANN  60
VAFENGFALV KATNGQKNRK QPELLASYFR CSRHGRSKSV YDPEKPKKKP RTQKCDCEFR  120
VRAVQNYNSI DNKWVVLWNI VISKGFGNHN HELTKYKDGH RHYAGLDEEE KAYIKQQYST  180
SAFPRDIKTG LHQKTPTNRI SICIIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110KPKKKPR
2105111PKKKPRT