PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca24602.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

LBD

Protein Properties

Length: 365aa MW: 39612 Da PI: 6.7159

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca24602.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.7	7e-42	189	288	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++ Dca24602.1 189 PCAACKILRRRCADKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPEAQRADAVSSMVYEANARLRDPVYGCAGAICQLQNQVSELQAQLAKARA 287 7**********************************************************************************************9987 PP DUF260 100 e 100 e Dca24602.1 288 E 288 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd09272	3.10E-38	53	145	No hit	No description
PROSITE profile	PS50891	25.945	188	289	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.1E-42	189	286	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MRPDLAYSVH TLSQYMHAPR EYHWAAALRV VRYLKGAPGQ GILLRSDAPL SSGWCGSDWA 60 ACPDTRRSLT GWLVFLGTSP ASPVPISCNS QSALHIAHSP VFHERTKHIE IDCHFVRDAI 120 KEGLIAPSYV NTSTQLADAL TKSLGVAQFT LLISKMGELS MDNNEAISAS SPAPQSTTAV 180 AASAVVVSPC AACKILRRRC ADKCVLAPYF PPSEPLKFTI AHRVFGASNI IKFLQELPEA 240 QRADAVSSMV YEANARLRDP VYGCAGAICQ LQNQVSELQA QLAKARAEVV SMKCQQANLL 300 ALICMEVAHQ QRPTVSDDSP ESQSPERPDN FPSNDACFIN DDNLGSIWSH FGPDVLSTEF 360 SLTSN

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MRPDLAYSVH TLSQYMHAPR EYHWAAALRV VRYLKGAPGQ GILLRSDAPL SSGWCGSDWA  60
ACPDTRRSLT GWLVFLGTSP ASPVPISCNS QSALHIAHSP VFHERTKHIE IDCHFVRDAI  120
KEGLIAPSYV NTSTQLADAL TKSLGVAQFT LLISKMGELS MDNNEAISAS SPAPQSTTAV  180
AASAVVVSPC AACKILRRRC ADKCVLAPYF PPSEPLKFTI AHRVFGASNI IKFLQELPEA  240
QRADAVSSMV YEANARLRDP VYGCAGAICQ LQNQVSELQA QLAKARAEVV SMKCQQANLL  300
ALICMEVAHQ QRPTVSDDSP ESQSPERPDN FPSNDACFIN DDNLGSIWSH FGPDVLSTEF  360
SLTSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-40	188	296	10	118	LOB family transfactor Ramosa2.1
5ly0_B	6e-40	188	296	10	118	LOB family transfactor Ramosa2.1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-60	LOB domain-containing protein 1