PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca24865.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family LBD
Protein Properties Length: 249aa    MW: 26909.6 Da    PI: 10.0936
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca24865.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.79.9e-304107199
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++dC+++p++      ++q++++ +++k++G++ +l+ll+a pe+ r+++++sl+yeA+ r+ dPvyG+vg++ ++q++ +ql++++
  Dca24865.1   4 SCNGCRVLRKGCSDDCTIRPCLnwiksSDAQAHATVFLAKFYGRAGLLNLLNAGPEHLRPAIFQSLLYEACGRVVDPVYGSVGLLYSGQWHHCQLAVDA 102
                 6*********************99986667899****************************************************************99 PP

      DUF260  95 allke 99 
                 +l ++
  Dca24865.1 103 VLKGH 107
                 98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.5113109IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MRTSCNGCRV LRKGCSDDCT IRPCLNWIKS SDAQAHATVF LAKFYGRAGL LNLLNAGPEH  60
LRPAIFQSLL YEACGRVVDP VYGSVGLLYS GQWHHCQLAV DAVLKGHPVM QLPPSSSPPG  120
VPPSNGGSPS QPLTFPPLQL YDIRHMSSAS GPSQTRLRHR RTPRVPIQEL SFNEEDDTGN  180
PKGLGAGQGV FGELGASRGV RGKEKKRSEK NRAEVATKAR PTGDQGATHW QPGREPGAGR  240
TTLLLFRAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155164RLRHRRTPRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856656.11e-81LOB domain-containing protein 41-like
SwissprotQ9M8865e-70LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A067JZK21e-69A0A067JZK2_JATCU; Uncharacterized protein
STRINGcassava4.1_014940m3e-69(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.18e-63LOB domain-containing protein 41