PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca2487.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C2H2

Protein Properties

Length: 121aa MW: 13826.2 Da PI: 7.8685

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca2487.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.9	4.5e-07	89	110	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cg +F+ + +Lk+H+ +H Dca2487.1 89 TCEKCGACFKKPALLKQHMLSH 110 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.473	88	113	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.6E-4	89	112	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	90	110	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MKIKGGQEVE ACWLVEKASL RFSSLFLVFS RPFDLVFSRL PSMPLYILME DAPTGEISRA 60 RGMTPVYRRH VSINEAKEVE DERLKSNNTC EKCGACFKKP ALLKQHMLSH SFEILELCES 120 V

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	2e-09	transcription factor IIIA