PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca24879.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 740aa MW: 85115.7 Da PI: 7.7093

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca24879.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.7	1.9e-13	46	139	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfYn Y+ GF +rk + k+ r+g+ +++ vC++ g+ +k+ e+ r +++ +++Cka++++ +gk+ v+++ +eHnHel Dca24879.1 46 KFYNIYGIGSGFGTRKYTAKHW-RDGSLKSKLIVCNRVGSYYAKKNPskeddsVETIGRITSVLNVDCKARIRLFCL-NGKFTVHEFIEEHNHELL 139 6**************99887.8999********877766665555555555567888899***9998.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-11	46	139	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-29	261	353	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.891	542	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0023	555	582	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.3E-4	556	578	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence Send to blast
MGEIVEGSLE GVDLSGINEG ALCENVERDF KPYVGQEFVS VEEAAKFYNI YGIGSGFGTR 60 KYTAKHWRDG SLKSKLIVCN RVGSYYAKKN PSKEDDSVET IGRITSVLNV DCKARIRLFC 120 LNGKFTVHEF IEEHNHELLS VQEREFKKLA SNLTDYHKNF IVSNIRLKIG ATKTYRMIKE 180 HVNGFSNIGA TLNQFKNFQR DLKCFIHEKD GQLFVDRFKS MADNRSGFFF DFDVDADGSL 240 RRAIWADAEA IRNYEVFGDA LSFDPTYSTN KYSMIFTPFT GVDNHKSTIT FSGALIANED 300 YESFNWVFDR FLKAMGGKEP EYIITDQDPA IIKSVGHIFK RSRHRFCMWH IMNKVPLKFG 360 GASSDLTEFV RKLNGIVWDA EIGAADFDCR WLEIMNEHGV GKGDWFEECF SIRRQWVMAH 420 CRDLRMGSLL RTTQRSESSN SFFKKFEHKS GTLVEFWLRF ESAIEQQRHN KNILDTKDRH 480 STPTTMITKL KIEEYGAKVY THKIFQEFQE EVRCSISNCI VRGYREEDDE QITTLKGSAN 540 DTVIDVHYNP VTSEMRCSCT LYERKGLPCR HILWLCTCHA IEKIPSSLLA RRWLKQEVFE 600 IGEGVQQLQL SSGRNQDGRQ SEMTKLWAEI NETVAFVQRG DLPNVIELCE NLKKFREEHE 660 SCGETVTKDQ EFENLLGCKV ISEVSILPPK QSKNKGSGKR MLSSKNVAVA VASKQKRMCK 720 NCKQLANHDK RNCPFPFVED

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence Send to blast

MGEIVEGSLE GVDLSGINEG ALCENVERDF KPYVGQEFVS VEEAAKFYNI YGIGSGFGTR  60
KYTAKHWRDG SLKSKLIVCN RVGSYYAKKN PSKEDDSVET IGRITSVLNV DCKARIRLFC  120
LNGKFTVHEF IEEHNHELLS VQEREFKKLA SNLTDYHKNF IVSNIRLKIG ATKTYRMIKE  180
HVNGFSNIGA TLNQFKNFQR DLKCFIHEKD GQLFVDRFKS MADNRSGFFF DFDVDADGSL  240
RRAIWADAEA IRNYEVFGDA LSFDPTYSTN KYSMIFTPFT GVDNHKSTIT FSGALIANED  300
YESFNWVFDR FLKAMGGKEP EYIITDQDPA IIKSVGHIFK RSRHRFCMWH IMNKVPLKFG  360
GASSDLTEFV RKLNGIVWDA EIGAADFDCR WLEIMNEHGV GKGDWFEECF SIRRQWVMAH  420
CRDLRMGSLL RTTQRSESSN SFFKKFEHKS GTLVEFWLRF ESAIEQQRHN KNILDTKDRH  480
STPTTMITKL KIEEYGAKVY THKIFQEFQE EVRCSISNCI VRGYREEDDE QITTLKGSAN  540
DTVIDVHYNP VTSEMRCSCT LYERKGLPCR HILWLCTCHA IEKIPSSLLA RRWLKQEVFE  600
IGEGVQQLQL SSGRNQDGRQ SEMTKLWAEI NETVAFVQRG DLPNVIELCE NLKKFREEHE  660
SCGETVTKDQ EFENLLGCKV ISEVSILPPK QSKNKGSGKR MLSSKNVAVA VASKQKRMCK  720
NCKQLANHDK RNCPFPFVED

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-70	FAR1-related sequence 5