PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca24904.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family AP2
Protein Properties Length: 572aa    MW: 63303.8 Da    PI: 6.5345
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca24904.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.42.3e-10285341155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+ ++ a++k++g
  Dca24904.1 285 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARSYDLAALKYWG 341
                 57*******************4444.2344336655.779999**************98 PP
2AP249.69.9e-16384435155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Dca24904.1 384 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 435
                 57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-8285341IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-14285351IPR016177DNA-binding domain
CDDcd000185.03E-19285351No hitNo description
SMARTSM003804.6E-22286355IPR001471AP2/ERF domain
PROSITE profilePS5103217.346286349IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-12286350IPR001471AP2/ERF domain
PRINTSPR003674.2E-6287298IPR001471AP2/ERF domain
CDDcd000181.03E-11384443No hitNo description
PfamPF008475.2E-10384435IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17384444IPR016177DNA-binding domain
PROSITE profilePS5103219.151385443IPR001471AP2/ERF domain
SMARTSM003801.6E-31385449IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-18385443IPR001471AP2/ERF domain
PRINTSPR003674.2E-6425445IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MAPAAEAVSN NNWLSFSLSP MDMFAHSHHP SSSPHILPSP FTSHQYFLDS FYSPEWGTQQ  60
QQQQHKASEE GEPATMGMMY TEYMVDHHPL DNNNNHNNNN NNNNNNTSST VPKLEDFFGN  120
NNTASYNSQQ TESTTQDSSS QLTHFYDNHH HNYFADHHHN NHQYNHHHNN QQDLNAMTSS  180
AGFQANSGSE VDDSGASTQL PSCVEFVAQS IEPDFAAAVS NAVNGGSLSL AVAPQVAEKS  240
SGVVAVVESD NSNDNIIINN NNNNSNNNNN NSVKKVSDTF GQRTSIYRGV TRHRWTGRYE  300
AHLWDNSCRR EGQARKGRQG GYDKEEKAAR SYDLAALKYW GPTATTNFPV SDYTKELEDM  360
KVATKQEFIA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE  420
EAAEAYDIAA IKFRGVNAVT NFEMNRYDVD AILNSNLPVG GAAKRLKLAT ESSDQKPLLT  480
LNQHPHSVNH GSPGNSSTIN FSAIQPTTQM TCTMPFDNAT AFYHQNLLQH LSSNAAGHAM  540
TLDGFGPSAV AAPMSLMAQT PAEFYIWPHQ SY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852422.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-150AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1R3GDZ81e-175A0A1R3GDZ8_COCAP; Uncharacterized protein
STRINGXP_010680360.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-131AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]