PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca24976.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 250aa    MW: 26993 Da    PI: 5.9026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca24976.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13186231655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Dca24976.1 186 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKTLQ 231
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.659180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16183246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-13184235No hitNo description
Gene3DG3DSA:4.10.280.102.0E-16185248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-12186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10186231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MQDPPGDPTR PGLSRFRSAP ATWLDALLDD DDPLKPPPSS SDHHHHHHGG GGSLTQLLSS  60
AGPDPSPTPD PEAPVSGPFV QPVNPDPGFY GGAPASFQRM NSSPADFLSS NVDGYFSSFG  120
IPSASYDFAT GGGGGSSGDV SPAVGQRRGE LTTANSLVEM EMEKLLEDSV PCRVRAKRGC  180
ATHPRSIAER VRRTRISDRI RKLQELVPNM DKQTNTADML EEAVEYVKTL QRQIEELTEQ  240
KKRCKCKAES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021767187.12e-98transcription factor bHLH81-like
SwissprotQ9C8P84e-72BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A0K9QRI57e-93A0A0K9QRI5_SPIOL; Uncharacterized protein
STRINGXP_010682704.14e-93(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-57bHLH family protein