PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca25035.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 227aa MW: 24965.7 Da PI: 8.1526

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca25035.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.9	2.7e-11	159	204	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq Dca25035.1 159 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 204 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.024	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-15	156	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.85E-11	157	208	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.3E-14	158	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-8	159	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-13	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MAGYCNSNQG GSVNGHNLSR LGTQLSFTKQ DHHSLSQISE LNGCGGMLEG MSSHDNNNNN 60 NSHTTALKRA STSSSQPRSS SGFSLSAWED SNDGFSFSGP SSTKRNKSIN DDILNGLVSM 120 ESQDIAFEMT SMDRLMQIPQ DSVPCKIRAK RGFATHPRSI AERERRTRIS GKLKKLQDLV 180 PNMDKQTSYA DMLDLAVQHI KGLQNEVQKL NGELDRCNCG CKENVQH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021761096.1	2e-92	transcription factor bHLH129-like isoform X1
Refseq	XP_021761097.1	2e-92	transcription factor bHLH128-like isoform X2
Swissprot	Q8H102	5e-59	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A0K9RZX9	9e-87	A0A0K9RZX9_SPIOL; Uncharacterized protein
STRING	XP_010666766.1	2e-87	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	5e-60	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]