PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca25151.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

ZF-HD

Protein Properties

Length: 388aa MW: 41839.3 Da PI: 8.4328

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca25151.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99.4	2.6e-31	58	111	4	56
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRre 56 + YkeClkNhAa++Ggh++DGCgEfmps++++ +++++lkCaACgCHRnFHRr+ Dca25151.1 58 AGYKECLKNHAAAMGGHVLDGCGEFMPSHTATaTDPTSLKCAACGCHRNFHRRD 111 56************************9999999****************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	6.7E-26	59	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-21	60	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.6E-29	60	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.014	60	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.08E-16	222	289	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-28	223	291	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.5E-27	230	287	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MDMIATTNST ATPTSPSAAT TPTAIIDGVT LIPPVNGVLK RHQKPHHTSH HVVVAGAAGY 60 KECLKNHAAA MGGHVLDGCG EFMPSHTATA TDPTSLKCAA CGCHRNFHRR DGAPLVGGGG 120 ARVVEYHPQH RHHPPPPPSA AVAPASPGSD NQSPPPISSS YFPSSAGRML LALSSGGGNN 180 SVDEHDNNVK LNTHNQPPQQ QQPQQQQQQP QQQPQMILNS GMSSPNFSGR KRFRTKFSQE 240 QKEKMQEFAE KLGWKMQKST DELVKGFCNS IGVQRDVFKV WMHNNKNTFV KRSTPPPHHP 300 PPPHLHPTNY IITSAANHHE SPLINNINNS NINIQMKDDF EQVDDDDGNG VGNSHSSSVN 360 NSLSIGHLHH HLSNNGATTH TNASSSSS

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MDMIATTNST ATPTSPSAAT TPTAIIDGVT LIPPVNGVLK RHQKPHHTSH HVVVAGAAGY  60
KECLKNHAAA MGGHVLDGCG EFMPSHTATA TDPTSLKCAA CGCHRNFHRR DGAPLVGGGG  120
ARVVEYHPQH RHHPPPPPSA AVAPASPGSD NQSPPPISSS YFPSSAGRML LALSSGGGNN  180
SVDEHDNNVK LNTHNQPPQQ QQPQQQQQQP QQQPQMILNS GMSSPNFSGR KRFRTKFSQE  240
QKEKMQEFAE KLGWKMQKST DELVKGFCNS IGVQRDVFKV WMHNNKNTFV KRSTPPPHHP  300
PPPHLHPTNY IITSAANHHE SPLINNINNS NINIQMKDDF EQVDDDDGNG VGNSHSSSVN  360
NSLSIGHLHH HLSNNGATTH TNASSSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-20	231	288	18	75	ZF-HD homeobox family protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010693250.1	5e-74	PREDICTED: zinc-finger homeodomain protein 9
TrEMBL	A0A200QSE3	1e-69	A0A200QSE3_9MAGN; ZF-HD homeobox protein
STRING	XP_010693250.1	2e-73	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15210.1	2e-46	homeobox protein 30