PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca25155.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 285aa MW: 32830.9 Da PI: 5.2718

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca25155.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.5	1.5e-54	8	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL++k +++++++ +i e+d +kvePwdLpk++k +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkdke+++ ++ l Dca25155.1 8 LPPGFRFHPTDEELITHYLCQKFHDESFNA-VAIGEADFNKVEPWDLPKMAKMGEKEWYFFCVKDRKYPTGLRTNRATEAGYWKATGKDKEIYR-EKLL 104 79***********************999.67***********999999*************************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg kktLvfy+grapkgekt+Wvmhe+r+ Dca25155.1 105 VGRKKTLVFYTGRAPKGEKTNWVMHEFRI 133 ***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-60	5	158	IPR003441	NAC domain
PROSITE profile	PS51005	55.516	8	158	IPR003441	NAC domain
Pfam	PF02365	1.3E-27	9	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEDEQIELPP GFRFHPTDEE LITHYLCQKF HDESFNAVAI GEADFNKVEP WDLPKMAKMG 60 EKEWYFFCVK DRKYPTGLRT NRATEAGYWK ATGKDKEIYR EKLLVGRKKT LVFYTGRAPK 120 GEKTNWVMHE FRIDGPLAKL THILNSKSEW VISRVFDKGL GLKKSIDDPE SSSHEEVQHQ 180 SHLPSLAESS SPINNEATIT TDANPSHVTC FSDTPLIGSP ERDMGPSCLE IMTYEEMVKF 240 GYVDSYFEQD QSIFKYLVQE KDSTPKVKVT QEHVSSDLND NLWTF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	5	158	14	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	5	158	14	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	5	158	14	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	5	158	14	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	5	158	17	168	NAC domain-containing protein 19
3swm_B	2e-52	5	158	17	168	NAC domain-containing protein 19
3swm_C	2e-52	5	158	17	168	NAC domain-containing protein 19
3swm_D	2e-52	5	158	17	168	NAC domain-containing protein 19
3swp_A	2e-52	5	158	17	168	NAC domain-containing protein 19
3swp_B	2e-52	5	158	17	168	NAC domain-containing protein 19
3swp_C	2e-52	5	158	17	168	NAC domain-containing protein 19
3swp_D	2e-52	5	158	17	168	NAC domain-containing protein 19
4dul_A	2e-52	5	158	14	165	NAC domain-containing protein 19
4dul_B	2e-52	5	158	14	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021770843.1	1e-107	NAC domain-containing protein 92-like
Refseq	XP_021770844.1	1e-107	NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	2e-90	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2N9GZ15	4e-92	A0A2N9GZ15_FAGSY; Uncharacterized protein
STRING	XP_010693263.1	1e-100	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-91	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]