PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca25158.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 291aa    MW: 32638.6 Da    PI: 5.9523
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca25158.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.1e-141456148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd llv +++++G+g+W++    ++ + t++++k++w+++l
       Dca25158.1 14 KGPWTPEEDILLVSYIQEHGPGNWRA----VP-TNTDNDIKNYWNTHL 56
                     79************************....55.5566********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-20564IPR009057Homeodomain-like
SuperFamilySSF466894.38E-14863IPR009057Homeodomain-like
PROSITE profilePS5129420.165960IPR017930Myb domain
SMARTSM007171.3E-101358IPR001005SANT/Myb domain
PfamPF002497.3E-131456IPR001005SANT/Myb domain
CDDcd001677.84E-111656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRPPCCDKE GVKKGPWTPE EDILLVSYIQ EHGPGNWRAV PTNTDNDIKN YWNTHLKKKL  60
RKNQSHNHQN PTSECLSSST TSFENHSSSS RGQWERRLQT DIHTAKQALT DALSSINQNS  120
DSNVVPELLT RSLSSKPTTT TTTTTSSMSY ASSAENIARL LQGWTGKTPK KEQSSSISEN  180
DQANSREQNP KTFDNYHFAA ADEHKNDQQG FRSMFGKVEC IESPYSDDLS NNSFLEKENK  240
PSLNNNALGR GTTLSILEKW LFDDCSIHHC GSHAQDEDLS DMPLQENADF L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021765881.13e-96myb-related protein 306-like
RefseqXP_021765882.13e-96myb-related protein 306-like
TrEMBLA0A0K9R2Y14e-89A0A0K9R2Y1_SPIOL; Uncharacterized protein
STRINGXP_010693237.12e-88(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.13e-42myb domain protein 94