PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca25159.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 294aa MW: 32874.2 Da PI: 8.8523

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca25159.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	96.4	4.5e-30	7	84	52	128
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ + +glkk+Lvfy+gra kg ktdW+mhe+rl Dca25159.1 7 STGEKEWYFYCPRDRKYRNSARPNRVTCAGFWKATGTDRPIYSSeAAKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 84 45789************************************855566*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.637	1	116	IPR003441	NAC domain
SuperFamily	SSF101941	3.14E-33	7	116	IPR003441	NAC domain
Pfam	PF02365	1.6E-12	12	84	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MQAELASTGE KEWYFYCPRD RKYRNSARPN RVTCAGFWKA TGTDRPIYSS EAAKCIGLKK 60 SLVFYRGRAA KGIKTDWMMH EFRLPSLSDS SGPPKKLFDK TLPANDSWAI CRIFKKTNSM 120 AQRALSHSWI SPLPEIHPIS DMFSNVPNHT AAHHISPENI SCTTDHLHGT PSTESFNHVI 180 SRADLPTNLM FPTADMIAVP RSTPEVSSML LNLSPAFTND AAKPTDVLGF GVSQHQFNGF 240 PVADDQFYFR KIQNQIWNNS TRSIGFPTTL SSWDSSVPCP SELSTSISSN KCYL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-33	6	119	66	168	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-33	6	119	66	168	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-33	6	119	66	168	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-33	6	119	66	168	NO APICAL MERISTEM PROTEIN
3swm_A	7e-33	6	119	69	171	NAC domain-containing protein 19
3swm_B	7e-33	6	119	69	171	NAC domain-containing protein 19
3swm_C	7e-33	6	119	69	171	NAC domain-containing protein 19
3swm_D	7e-33	6	119	69	171	NAC domain-containing protein 19
3swp_A	7e-33	6	119	69	171	NAC domain-containing protein 19
3swp_B	7e-33	6	119	69	171	NAC domain-containing protein 19
3swp_C	7e-33	6	119	69	171	NAC domain-containing protein 19
3swp_D	7e-33	6	119	69	171	NAC domain-containing protein 19
4dul_A	6e-33	6	119	66	168	NAC domain-containing protein 19
4dul_B	6e-33	6	119	66	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021765840.1	1e-126	protein FEZ-like
Swissprot	Q9ZVH0	2e-65	FEZ_ARATH; Protein FEZ
TrEMBL	A0A0K9QFK8	1e-126	A0A0K9QFK8_SPIOL; Uncharacterized protein
STRING	XP_010693234.1	1e-124	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	8e-68	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]