PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca25171.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 583aa    MW: 64356.3 Da    PI: 6.8444
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca25171.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY941.1e-29239298159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+++d +++++tYeg+H h+
  Dca25171.1 239 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCSDDMSILITTYEGTHSHP 298
                 58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-31225300IPR003657WRKY domain
SuperFamilySSF1182906.93E-27232300IPR003657WRKY domain
PROSITE profilePS5081128.128234300IPR003657WRKY domain
SMARTSM007749.0E-36239299IPR003657WRKY domain
PfamPF031061.6E-26240298IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
METKQQNSGV SDETKQMDVE IVSFEDRRSE EKLIIKDEDM SSNTSSPTKQ KLRLENEDNL  60
ESTEAEMGDM KEENERLKKT LEQIKNDYRS LQTRFNEILQ HEQHPTMLEV KSPKAEAKKE  120
DDPETSLSLG FQSASKRKKD DVSRISPKDR KSVELMSEGL SLGLEFKSTP RIDLTDVRSE  180
RSNEIENTKD DDDTTEDACR PSKVLKTTDK SEKQEESDQS NSPKRARVSV RARCETPTMN  240
DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPA CPVRKQVQRC SDDMSILITT YEGTHSHPLP  300
VAATAMASTT SAAASILLSG SSTSQDPSLS ASATTTANLN GLNFTLYNNS KPGQINLPNC  360
SSPTPPTITL DLTANSSSQF TKRFSSNFFP SHKYSRSLDF SSSEAATFPT LWSSSSYPNY  420
GSLTSNTNSA GSISFGKPSQ EQINHPSMDR INHSVTSSTS SQHYLTETLT KVLTSDPSFQ  480
SAVAAAISTM VGSSNNNAMN TSRINAESMA QSLRWGNQSP GISISTLPQS NKECIPHFLN  540
RSTSSTMNSQ AAGSFMMLQP QFPFSLSRTS STPDLKDHIK KLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20226300174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021758451.10.0probable WRKY transcription factor 72 isoform X1
TrEMBLA0A0K9R1E71e-174A0A0K9R1E7_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010693337.11e-171(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-77WRKY DNA-binding protein 72