PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca25209.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 134aa    MW: 14879.1 Da    PI: 9.0516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca25209.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.67.1e-062771554
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                +++  + R +++ +++  L+el+ +      +K + a++L +A++YI+ L
  Dca25209.1 27 ASMSSKDRKEKLGEKITALQELVSPY-----GKTDTASVLLEAMDYIRFL 71
                666778999999***********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.06E-72076No hitNo description
PROSITE profilePS5088812.4872271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-122284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-102380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-42877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MTELKRSVAP VDQESLTSSS KCQKVDASMS SKDRKEKLGE KITALQELVS PYGKTDTASV  60
LLEAMDYIRF LHEQVKVLSA PYLYNTPATN MEVLGHYSLR SKGLCLVPVS YTDKLARNNG  120
ADLWAPIKTT RPNV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021752734.17e-68transcription factor bHLH153-like isoform X1
SwissprotQ7XJU14e-51BH154_ARATH; Transcription factor bHLH154
TrEMBLA0A0K9RQ204e-66A0A0K9RQ20_SPIOL; Uncharacterized protein
STRINGXP_010672412.16e-64(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31730.12e-53bHLH family protein