PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca25477.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 662aa    MW: 73377 Da    PI: 8.4752
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca25477.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-07558607147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
       Dca25477.1 558 RRPFSVSEVEALVHAVEKLGTGRWRDVKLCSFenaKHRTYVDLKDKWKTL 607
                      678999********************99999899*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.19E-7366452IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.905.6E-4369441No hitNo description
PROSITE profilePS500539.33372440IPR000626Ubiquitin domain
CDDcd017693.81E-4376441No hitNo description
PROSITE profilePS5129413.83553612IPR017930Myb domain
SMARTSM007174.5E-7557610IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-9558608IPR009057Homeodomain-like
SuperFamilySSF466898.61E-15559639IPR009057Homeodomain-like
CDDcd116605.07E-16559609No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000781Cellular Componentchromosome, telomeric region
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MVLVKRTSNR FNGYDSLVVP RAPRSARKRR LYQKSLGATQ LCAFELLATI AGKLLEESEC  60
SSASSSVAVG LDQRGIVKDD VKLEPQDADK PLVLECDDLG SLNFSGTQEV FPEEKIDNVV  120
NVKHVSPGTS SVCSEKFEPK IKLKNDNEFV KLTNNIIREF PFGGDSDDTN VEIGVNRKVD  180
IIKVADNKSP ELANSEEFAE LPFCKDTVTN ASFTENVNAV NLGCKDEDEI HYRCSQPDTV  240
KKIPRSTKPV EDQNHQIFGK LLTSENWKKI PKLKDCDVAN SGGGANHAYH NKRTSYEIDR  300
SQRDTPFKKR KIFDGSAVTC DGGISCESVS NSPEKKSGDD KNAFSGTMHG GKEKLSSGFR  360
RQNSFDSKNS HVRLSIKSFK IPELFVEVPE STTVGSLKTT ILEAVKSILG EGLNVGVLLH  420
GKKIRDDNRT LTQIGISQND DTSTVGFMLE PSTTTQPTSV VPEEPCPPLL SESPKFVNRP  480
RINLKEENFM FGPLEKPSAT ATGSPAESCR NLIPSANVEF AKKNISSSKA LVPVPEPLAV  540
MPISQKSKHS EIGHRRTRRP FSVSEVEALV HAVEKLGTGR WRDVKLCSFE NAKHRTYVDL  600
KDKWKTLVHT ARISPQQRRG EPVPQELLDR VLVAQAYWSE HQTKHHGKQH HNIVPKLTDS  660
VT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-505426461105Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301310QRDTPFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690776.10.0PREDICTED: telomere repeat-binding protein 3
TrEMBLA0A0K9RZZ30.0A0A0K9RZZ3_SPIOL; Uncharacterized protein
STRINGXP_010690776.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.16e-95TRF-like 2