PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca25540.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bZIP

Protein Properties

Length: 410aa MW: 45961.7 Da PI: 7.9702

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca25540.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.1	6.9e-07	126	186	1	61
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 eke +r rr NRe+Ar +R++a eeL++++ eL +eN++Lk + ++ ++l++ Dca25540.1 126 EKEARRVRRILANRESARQTIRRRQALYEELKRRSLELASENEDLKRAKNLAAQQFQSLQT 186 7999******************************************666666777777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-5	126	190	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.14	128	191	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.4E-4	130	186	No hit	No description
CDD	cd14702	3.13E-10	131	182	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MESIAVGEVE AAEVLAGLGR VNDMDGRGGD NCGWGSRGKR TGCKRVRDFN EAVDAERSIV 60 EGNSLPLPFD LNMDQTDLCE EECEKDDNAS VYVKVEEYEA VERSCVGVVR ARQNGNRSRH 120 DLSEAEKEAR RVRRILANRE SARQTIRRRQ ALYEELKRRS LELASENEDL KRAKNLAAQQ 180 FQSLQTTNLN LKDKISKTAG LELGKNSERE IATTETHSVQ PPKWQQFLPN SWLLPAYVQP 240 PDVEIPQLPS HSGVPVSPEM TIANGRENSS RSTTQQIPWC VLPCPCFQLA SLKMAVKDEE 300 TVFDARHICS LSSVIPRLHE CSTSSNARVL FQAECPSLCS LRNSLSLNRE PHGDGVRSEV 360 GKVSNVSCAY DPSRKKSDVV IAGAEARRRR REVIKLKSLH YDSVSRRRYV

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MESIAVGEVE AAEVLAGLGR VNDMDGRGGD NCGWGSRGKR TGCKRVRDFN EAVDAERSIV  60
EGNSLPLPFD LNMDQTDLCE EECEKDDNAS VYVKVEEYEA VERSCVGVVR ARQNGNRSRH  120
DLSEAEKEAR RVRRILANRE SARQTIRRRQ ALYEELKRRS LELASENEDL KRAKNLAAQQ  180
FQSLQTTNLN LKDKISKTAG LELGKNSERE IATTETHSVQ PPKWQQFLPN SWLLPAYVQP  240
PDVEIPQLPS HSGVPVSPEM TIANGRENSS RSTTQQIPWC VLPCPCFQLA SLKMAVKDEE  300
TVFDARHICS LSSVIPRLHE CSTSSNARVL FQAECPSLCS LRNSLSLNRE PHGDGVRSEV  360
GKVSNVSCAY DPSRKKSDVV IAGAEARRRR REVIKLKSLH YDSVSRRRYV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	373	390	RKKSDVVIAGAEARRRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19490.1	8e-22	bZIP family protein