PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca25555.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 163aa    MW: 18516.8 Da    PI: 6.7876
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca25555.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.46.4e-1063145790
        FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 A+++GF + ks++k +   g++  +  +C + gk + + k+  ++ +r+++++++++C  k+k+   +dgk+ v+ +   HnHe+a
  Dca25555.1  63 AHDLGFGLFKSSNKPR---GTTEYHLIKCERGGKYNGSFKDpfKVPKRKKTTSKKIECPFKIKIISGTDGKFAVMPMYGFHNHEMA 145
                 899******9998877...66678999********9999999999***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-763145IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSTTGDDEFN DGDYEVDDQS GLGDDNISVD ALIGDDIDYS FHFMNTLCFQ NMKMAYTWAQ  60
AIAHDLGFGL FKSSNKPRGT TEYHLIKCER GGKYNGSFKD PFKVPKRKKT TSKKIECPFK  120
IKIISGTDGK FAVMPMYGFH NHEMAKYFDG HRQMTSFSER TPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-