PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca25592.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

G2-like

Protein Properties

Length: 93aa MW: 10198.8 Da PI: 10.2732

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca25592.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.7	4e-31	42	92	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWtp+LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQ Dca25592.1 42 KPRLRWTPDLHQRFVDAVSKLGGPDKATPKSVLKLMGMKGLTLYHLKSHLQ 92 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.642	39	93	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-29	39	92	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-14	42	92	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-22	42	93	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-9	44	92	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MESGLGGVYG GSQGGSGVGY PYQFHHQHQL MEGGIIMSRD PKPRLRWTPD LHQRFVDAVS 60 KLGGPDKATP KSVLKLMGMK GLTLYHLKSH LQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	42	92	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	42	92	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-20	42	92	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	42	92	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	42	92	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	42	92	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	42	92	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	42	92	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	42	92	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	42	92	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	42	92	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	42	92	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021725593.1	7e-38	myb family transcription factor PHL11-like
Refseq	XP_021862386.1	5e-38	myb family transcription factor PHL11
Swissprot	C0SVS4	2e-32	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A2I4H7R8	4e-33	A0A2I4H7R8_JUGRE; myb family transcription factor PHL11
STRING	XP_010677471.1	7e-34	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-32	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]