PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca25687.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARR-B
Protein Properties Length: 587aa    MW: 64677.2 Da    PI: 8.8026
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca25687.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.66.8e-29210263155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Dca25687.1 210 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 263
                 79*******************.********************************8 PP
2Response_reg77.25.8e-26341421109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ + +l+++l++ +y +v  ++ +e al+ll+e++  +D++l D+ mp+mdG++ll++   e  +lp+i+++a +++  + + +  Ga 
    Dca25687.1  34 VLVVDDDPTCLTILEKMLRSCKY-VVSKTKRAEVALNLLRENQngFDVVLSDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSNHVVMKGVTHGAC 128
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l +
    Dca25687.1 129 DYLIKPVRIEALKN 142
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.1E-16211582IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.9E-4131155No hitNo description
SuperFamilySSF521728.25E-3431152IPR011006CheY-like superfamily
SMARTSM004481.0E-2832144IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.48433148IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.6E-2334142IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.74E-2635147No hitNo description
PROSITE profilePS5129412.785207266IPR017930Myb domain
SuperFamilySSF466891.97E-20207267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-31207268IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-25210263IPR006447Myb domain, plants
PfamPF002498.1E-8212262IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MMKLGGRVMG SMSLPSSTVT RKPVPDKFPA GLRVLVVDDD PTCLTILEKM LRSCKYVVSK  60
TKRAEVALNL LRENQNGFDV VLSDVHMPDM DGFKLLEHVG LEMDLPVIMM SADDSNHVVM  120
KGVTHGACDY LIKPVRIEAL KNIWQHVVRK KKKNEWKEAE QSSSWDEGDR RQRQDDAVSS  180
PANEGSWKSS KRKSEDEDPD EKDDTTTQKK PRVVWSVELH QQFVAAVNQL GIDKAVPKKI  240
LELMNVPGLT RENVASHLQK YRLYLKRLSE ASQFQGGFDS SFMSQDSGLR AMSSISGMDI  300
HALHATGQLS GQTLAAYTRL PLIGPSMSMP FIDQRNMFSF ENAKPRYGDP QQQPQSSNSS  360
KEMHLLQGIP TTMEPKQFTG LNQSVQNMGH MNMLANASTS HQSTSSLIKM GPQQSQGLLS  420
NESIGIHASQ PLIGQPAQSN GAARTVLTRN GTSSLQGFNQ EVNNLGFKPL DGYVGNYEMQ  480
INATFGSSSQ PSISLSSSVN VIPSVSVNQS RITGNALPGK PMVTSRLDNQ HMGMQNINHN  540
VSGIVADDTS RGKAEKHSNI VSSGTNVFSE RYSQDDLMCT VLKQVRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-23206269164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670915.10.0PREDICTED: two-component response regulator ARR2 isoform X2
SwissprotQ9ZWJ91e-146ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0K9RPY90.0A0A0K9RPY9_SPIOL; Two-component response regulator
STRINGXP_010670914.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-136response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]