PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca25750.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 763aa MW: 88756.6 Da PI: 7.5064

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca25750.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.4	8.5e-17	51	144	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ YA ++GF++r+ +++k ++g+ +++ vC++egk +++kk+ ++ +r+ ++ +gCka++++ +g ++++++++eH+Hel+ Dca25750.1 51 DFYKIYALSIGFDIRRYSEHKW-HDGTLKTKLIVCNREGKYKSKKKTecvdnsGDNVQRRGKVLAVGCKARIRLFCL-NGLFKIDQFVQEHSHELV 144 6**************99998.8888************9999999987666677888999*****999.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-13	51	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.1E-29	266	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.014	548	584	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.8E-5	559	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.6E-4	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence Send to blast
MVEMQIVPAE SGAIDATSLN GMDESYLCET VKEDFKPFVG LEFVSVDEAA DFYKIYALSI 60 GFDIRRYSEH KWHDGTLKTK LIVCNREGKY KSKKKTECVD NSGDNVQRRG KVLAVGCKAR 120 IRLFCLNGLF KIDQFVQEHS HELVSAEDRE FQKLSTSLTE YHKAFILSNI RLNIGATKTY 180 RMIKEHVNGF ENIGATLNQL RNFQRDMKCF IHERDGQLLI DRFKSMEENV PDFFFDYDVD 240 EDGSLRRVIW ADGVRRRNYQ LFGEAISFDP TYSTNKYSMV FTPFTGVDNH KKTITFSGAL 300 IAKEDFESFN WVFSKFLSCM GGKEPEYIIT DQDPGIIKSV NHMFKHCRHR FCTWHIMSKV 360 SIKYGATRND CKDFLAKLNS IVWDEKIEPT DFDSRWLQIM EEYGVGKGDW FEDSFSIRKQ 420 WVQSHCKDLR MGSLLRTTQR SESSNSFFKK FEHKNGTLVE FWMRFESAVE QQRQNKRRLD 480 NGDKHSTEKL ITHLKIEEDA SKVYTAEIFE DFQKEVKYSV STCRCKGYLE DNDFQITLVE 540 DSKRERLFEV QFHPGTLNVK CSCRLYERKG ILCRHVLWIY TSHAVEKIPD DFVARRWMRS 600 SDCNGDKSKS SLVWADNADG RHVQLTKLWA EINETVAFLQ HRDLKFTEEM CEFLRKFRED 660 HKSSYEVVTK EQEFEMLLGC KASSNISVMP PKQSKNKGSG KWMVSSRSIA IASSNKRKRL 720 CNNCKQMAHH DKRNCPYPFV ESAAAVDSSA EDNGEGDDEL SLL

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence Send to blast

MVEMQIVPAE SGAIDATSLN GMDESYLCET VKEDFKPFVG LEFVSVDEAA DFYKIYALSI  60
GFDIRRYSEH KWHDGTLKTK LIVCNREGKY KSKKKTECVD NSGDNVQRRG KVLAVGCKAR  120
IRLFCLNGLF KIDQFVQEHS HELVSAEDRE FQKLSTSLTE YHKAFILSNI RLNIGATKTY  180
RMIKEHVNGF ENIGATLNQL RNFQRDMKCF IHERDGQLLI DRFKSMEENV PDFFFDYDVD  240
EDGSLRRVIW ADGVRRRNYQ LFGEAISFDP TYSTNKYSMV FTPFTGVDNH KKTITFSGAL  300
IAKEDFESFN WVFSKFLSCM GGKEPEYIIT DQDPGIIKSV NHMFKHCRHR FCTWHIMSKV  360
SIKYGATRND CKDFLAKLNS IVWDEKIEPT DFDSRWLQIM EEYGVGKGDW FEDSFSIRKQ  420
WVQSHCKDLR MGSLLRTTQR SESSNSFFKK FEHKNGTLVE FWMRFESAVE QQRQNKRRLD  480
NGDKHSTEKL ITHLKIEEDA SKVYTAEIFE DFQKEVKYSV STCRCKGYLE DNDFQITLVE  540
DSKRERLFEV QFHPGTLNVK CSCRLYERKG ILCRHVLWIY TSHAVEKIPD DFVARRWMRS  600
SDCNGDKSKS SLVWADNADG RHVQLTKLWA EINETVAFLQ HRDLKFTEEM CEFLRKFRED  660
HKSSYEVVTK EQEFEMLLGC KASSNISVMP PKQSKNKGSG KWMVSSRSIA IASSNKRKRL  720
CNNCKQMAHH DKRNCPYPFV ESAAAVDSSA EDNGEGDDEL SLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-75	FAR1-related sequence 5