PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca25825.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 265aa MW: 29442.8 Da PI: 7.6217

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca25825.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.3	2.5e-12	111	160	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++ e+Er+RR+++ + Lr++lP +K s a+ L +Av+YIk++ Dca25825.1 111 MKALEIERQRRQEMSTLCGSLRSMLPAeY---IRGKRSTADHLHEAVRYIKDM 160 66779********************77...*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.66E-9	106	164	No hit	No description
PROSITE profile	PS50888	13.427	108	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.68E-13	109	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-9	111	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-11	112	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-4	114	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDQNSSNPSN PLPNDDSFDL DEELLQWLSN LPPITSSQVD NYNSQEPISN NNYNNSTLGL 60 DPRVGNPIIG GNNNSVFMAE KNSHLGDPPP RNVGVAGSSS GKGKQPQSEK MKALEIERQR 120 RQEMSTLCGS LRSMLPAEYI RGKRSTADHL HEAVRYIKDM EDNIGKLTKQ RDELLKGKTR 180 TGSSTSSNDN NSRQQYVSVT KCNEGFYEIV LKTNGVNFEE NQQKLPISRA FGLLRREGFS 240 ITSSISSKIG NNLMHTIHAQ VSMIL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	2e-23	bHLH family protein