PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca2590.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 232aa    MW: 26800.8 Da    PI: 9.2767
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca2590.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-082848525
               --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
               +Cr+f  tG+C yGd CkFaH
  Dca2590.1 28 ICRNFWSTGHCVYGDACKFAH 48
               69999999************* PP
2zf-CCCH28.52.6e-09130155227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+lC++++   tC+yGd+C++aHg+
  Dca2590.1 130 KTRLCSNWRGDDTCPYGDKCTYAHGR 155
                8********999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-72451IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-42550IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-82749IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0562851IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-62848IPR000571Zinc finger, CCCH-type
SMARTSM003560.277096IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.2827097IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-57298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-14125159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-9127159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.779128156IPR000571Zinc finger, CCCH-type
SMARTSM003560.002128155IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6130155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDTPHYNPNS VHRRTSNTRE NFLHNDQICR NFWSTGHCVY GDACKFAHKL RNDRSQYVNS  60
GLKSTNDSNK PQRTVCYYFS RGGNCPYDRC IFPHQISEEK RDVARESASI SIPTVEARHV  120
VVARNNHQVK TRLCSNWRGD DTCPYGDKCT YAHGRAELRR GTWTSEHRNL RATSKTTKTN  180
DLVSNSAEHP VQKSPLKPKV CPFKWNNRKL VGIYADWINE DSLDIDSPEK QQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-13C3H family protein