PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca26323.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 763aa MW: 88192.1 Da PI: 7.5947

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca26323.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.7	7.1e-17	52	144	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+ Y+ ++GF++r+ +++k ++g+ +++ vC++egk +++kk+ ++ +r+ ++ +gCka++++ +g ++++++++eHnHel+ Dca26323.1 52 FYKIYGLSIGFDIRRYSEHKW-DDGTLKTKLIVCNREGKYKSKKKTecvdnsGDNVQRRGKVLAVGCKARIRLFCL-NGLFKIDQFVEEHNHELV 144 9*************99998.8888************9999999987666677888999*****999.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-13	52	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-29	266	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.002	548	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.5E-5	559	586	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	4.6E-5	560	581	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence Send to blast
MVEMQIVPAE SGAIDAGSLN GMDESYLCET VKEDFKPFVG QEFVSVDEAA GFYKIYGLSI 60 GFDIRRYSEH KWDDGTLKTK LIVCNREGKY KSKKKTECVD NSGDNVQRRG KVLAVGCKAR 120 IRLFCLNGLF KIDQFVEEHN HELVSAEDRE FQKLSTCLTE YHKAFILSNI RLNIGATKTY 180 RMIKEHVNGF GNIGATLNQF RNFQRDMKCF IHERDGQLLI DRFKSMEENV ADFFFDYDVD 240 EDGSLRRVIW ADGVGRRNYQ LFGEAISFDP TYSTNKYSMV FTPFTGVDNH KKTITFCGAL 300 IAKEDFESFN WVFSKFLSCM GGKEPEYIIT DQDPGIIKSV SHMFKHCRHR FCTWHIMNKV 360 SIKYGATRND CKDFLAKLNS IIWDEEIEPT DFDSRWLQIM EEYGVGKGDW FEDSFSIRRQ 420 WVQAHCKDLR MGSLLRTTQR SESSNSFFKK FEHKTGTLVE FWMRFESAVE QQRHNKKRLD 480 NGDKHSTEKL ITHLKIEEDA SKVYTAEIFE DFQKEVKYSV STCRCKGYLE DNDVQVILVE 540 DSKRERVFEV QFHPGTLNVK CSCRLYERKG ILCRHVLWIY TSHGVEKIPD DFVARRWMRS 600 SDSNGVKSKL FLEGGDNADG RQVQLTKLWA EINETVAFLQ NRDLKFTEEM CESLRKFRED 660 HKSSYVVVTK EQEFEKLLGC KASSNISVMP PKHSKNKGSG KRMVSSRSIA IATSNKRKRL 720 CNNCKQMAHH DKRNCPYPVV ESAAAVDSSG EENGEGVDEL SLL

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence Send to blast

MVEMQIVPAE SGAIDAGSLN GMDESYLCET VKEDFKPFVG QEFVSVDEAA GFYKIYGLSI  60
GFDIRRYSEH KWDDGTLKTK LIVCNREGKY KSKKKTECVD NSGDNVQRRG KVLAVGCKAR  120
IRLFCLNGLF KIDQFVEEHN HELVSAEDRE FQKLSTCLTE YHKAFILSNI RLNIGATKTY  180
RMIKEHVNGF GNIGATLNQF RNFQRDMKCF IHERDGQLLI DRFKSMEENV ADFFFDYDVD  240
EDGSLRRVIW ADGVGRRNYQ LFGEAISFDP TYSTNKYSMV FTPFTGVDNH KKTITFCGAL  300
IAKEDFESFN WVFSKFLSCM GGKEPEYIIT DQDPGIIKSV SHMFKHCRHR FCTWHIMNKV  360
SIKYGATRND CKDFLAKLNS IIWDEEIEPT DFDSRWLQIM EEYGVGKGDW FEDSFSIRRQ  420
WVQAHCKDLR MGSLLRTTQR SESSNSFFKK FEHKTGTLVE FWMRFESAVE QQRHNKKRLD  480
NGDKHSTEKL ITHLKIEEDA SKVYTAEIFE DFQKEVKYSV STCRCKGYLE DNDVQVILVE  540
DSKRERVFEV QFHPGTLNVK CSCRLYERKG ILCRHVLWIY TSHGVEKIPD DFVARRWMRS  600
SDSNGVKSKL FLEGGDNADG RQVQLTKLWA EINETVAFLQ NRDLKFTEEM CESLRKFRED  660
HKSSYVVVTK EQEFEKLLGC KASSNISVMP PKHSKNKGSG KRMVSSRSIA IATSNKRKRL  720
CNNCKQMAHH DKRNCPYPVV ESAAAVDSSG EENGEGVDEL SLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-76	FAR1-related sequence 5