PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca26497.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family SBP
Protein Properties Length: 736aa    MW: 82149.1 Da    PI: 5.4778
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca26497.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1184.7e-37109185177
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 +Cqv+gCe+d+s++k yhrrh+vC  +++a++v ++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k 
  Dca26497.1 109 RCQVPGCEVDISQLKGYHRRHRVCLSCANATSVSIDGETKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRRRKP 185
                 6************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.6E-29107171IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.462107184IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.76E-34108187IPR004333Transcription factor, SBP-box
PfamPF031109.9E-28110184IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MELPHASAGD APFEWNDFFD FTLDDNIFAT LTADPAPPPP PPDATEDPAE ESAVDRVRKR  60
DPRMVCENFL AGMVPCACPE LDAMIKAEEE EAGPGKKRAR VGRTPGLARC QVPGCEVDIS  120
QLKGYHRRHR VCLSCANATS VSIDGETKRY CQQCGKFHLL PDFDEGKRSC RRKLERHNNR  180
RRRKPADSKT AVEKDNQGDW QTEDVSSDSD ICKDKAWASS QLAEREDSKD GTLSNLGMAP  240
ESQNIDIEST MTFTQAEKVL DDAKKDRSPP SDNKSAYSSA IFQWLSNMLV ELEGYIRPGC  300
TIVTAFVSMP QCMWAKLFED PVSYIQSSVG PGGMLFGKGA ASVYLNDLTY RVLRDGTSVM  360
KVEVAVRAPK LHYVYPPCFE AGKPMDLIAC GSNLLQSKFR SLISFAGEYL AHDYYVSFSH  420
GKDNSNSGDD FDRQSCRIYV PSTKPSFFGP AFVEVENECG LSNFIPVLIG DEHVCAEINM  480
IHQKYDFCYC VKKSPRNPFG FSHGACEASC SGQTAFYEFM LDVAWLLKCP SSEKLQHVMT  540
SCQVRRFSSV LNILTSSRSN FILEKILGAL VCVLDEIESS NASTITDTDK RRLNESFNHA  600
KDFLCQNLCK NELLLQRVED LLPKGNDDRM DDESLLNYDS AQASEKEAVI KHRLLESSDC  660
VRLDREACMN GIGYMEWPKT FNYFMVSKRV TITRPLVYMV AAVAVCFGVC AVAFHPQKVA  720
NLAVTIRSCV FDQSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-41107188384squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170182RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666331.10.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A0J8B8870.0A0A0J8B887_BETVU; Uncharacterized protein
STRINGXP_010666331.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-162squamosa promoter binding protein-like 7