PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca26620.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 166aa MW: 18488.6 Da PI: 6.5008

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca26620.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.6	8e-10	14	45	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg W++eEde+l++++ +G g+W+++++ g Dca26620.1 14 RGLWSPEEDEKLINYISTFGHGCWSSVPKLAG 45 788*************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-14	5	43	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.103	9	57	IPR017930	Myb domain
SuperFamily	SSF46689	1.87E-8	9	45	IPR009057	Homeodomain-like
Pfam	PF00249	5.3E-8	14	45	IPR001005	SANT/Myb domain
CDD	cd00167	1.49E-6	17	45	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MGHHTCCNKQ KVKRGLWSPE EDEKLINYIS TFGHGCWSSV PKLAGLIINS QQIPTNETLE 60 PHYDHDHDHD MMKMKCNDDH NMPSSSLSLS HHQQVSKFVD ISSSSLEYVD VEYHDHAMIP 120 PPPSSSSSSS PPPPPPPPPR PPTTTSSSLH IGPTDQPYHV VSNRLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	1e-25	myb domain protein 26