PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca26629.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 184aa    MW: 20651.8 Da    PI: 8.4653
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca26629.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.1e-1093177191
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                 f+k    s + + + l +p +f++++  +   ++++tle+e+g+ +e k+    +  ++ +++GW +F+   +L + D+ vF+l+g+++f+
  Dca26629.1  93 FVKYIFASEAIRDSKLPIPAPFCRRYLPV--VDTMMTLETENGELYEAKY--LPR--GINFSGGWGRFAFCEKLAQDDVAVFHLVGSTKFK 177
                 7788889999999*************533..4569***************..555..4669***********************9987774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.470.106.1E-311486IPR005122Uracil-DNA glycosylase-like
SuperFamilySSF521413.92E-281485IPR005122Uracil-DNA glycosylase-like
SuperFamilySSF1019369.61E-1588176IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-1189177IPR015300DNA-binding pseudobarrel domain
CDDcd100172.36E-1291177No hitNo description
SMARTSM010196.9E-893178IPR003340B3 DNA binding domain
PfamPF023626.8E-993177IPR003340B3 DNA binding domain
PROSITE profilePS508639.33393184IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
FRLFELESAS FSRKDPYHGP GQAMGLSFSV PEGIKIPSSL VNIFKELKQD LGCSIPSHGN  60
LERWAVQGVL LLNTVLTVSA QVWNKKNFEQ PIFVKYIFAS EAIRDSKLPI PAPFCRRYLP  120
VVDTMMTLET ENGELYEAKY LPRGINFSGG WGRFAFCEKL AQDDVAVFHL VGSTKFKQFA  180
LPNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zoq_A7e-27147864128URACIL-DNA GLYCOSYLASE
3zor_A7e-27147864128URACIL-DNA GLYCOSYLASE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A453DE952e-36A0A453DE95_AEGTS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-15B3 family protein