PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca26661.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 251aa    MW: 29077.4 Da    PI: 5.0985
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca26661.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-184194356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k++++t eq++ Le+ Fe ++++  +++ eLAkk+gL+ rqV +WFqNrRa++k
  Dca26661.1 41 KKRRLTIEQVQFLERSFETENKLEPDRKMELAKKIGLQPRQVAIWFQNRRARYK 94
                56689************************************************9 PP
2HD-ZIP_I/II126.61.1e-4040131192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl+ eqv++LE+sFe+e+kLep+rK+ela+++glqprqva+WFqnrRAR+ktkqlEk+y +Lk++yd+lk + ++L+ke ++L++e++
   Dca26661.1  40 EKKRRLTIEQVQFLERSFETENKLEPDRKMELAKKIGLQPRQVAIWFQNRRARYKTKQLEKEYGSLKANYDQLKLDFDSLSKERDNLQNEVE 131
                  69**************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.04E-193298IPR009057Homeodomain-like
PROSITE profilePS5007117.5723696IPR001356Homeobox domain
SMARTSM003895.0E-1839100IPR001356Homeobox domain
PfamPF000468.3E-164194IPR001356Homeobox domain
CDDcd000861.54E-164197No hitNo description
Gene3DG3DSA:1.10.10.608.2E-2043103IPR009057Homeodomain-like
PRINTSPR000313.1E-66776IPR000047Helix-turn-helix motif
PROSITE patternPS0002707194IPR017970Homeobox, conserved site
PRINTSPR000313.1E-67692IPR000047Helix-turn-helix motif
PfamPF021831.8E-1596137IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MVNFDQDCHQ GRKSATKRDH IDIGLDSNID DFELNSYQSE KKRRLTIEQV QFLERSFETE  60
NKLEPDRKME LAKKIGLQPR QVAIWFQNRR ARYKTKQLEK EYGSLKANYD QLKLDFDSLS  120
KERDNLQNEV EVLTEKLKQR GDKTTTIFHM STVTPKMEIV KNDKTTAFAV LGNTNNNKQL  180
FVEDASSAKS DVFDSESPHC TDGNHSSLMD DPADQQSDFS PSLTPVYNNF LKVEDIGGFD  240
PNEQPFWSML Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896RRARYKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683269.12e-77PREDICTED: homeobox-leucine zipper protein HAT5 isoform X1
RefseqXP_010683271.12e-77PREDICTED: homeobox-leucine zipper protein HAT5 isoform X2
TrEMBLA0A068TVH77e-60A0A068TVH7_COFCA; Uncharacterized protein
STRINGXP_010683269.19e-77(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-42homeobox 1