PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca26741.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 506aa    MW: 54834.5 Da    PI: 7.0582
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca26741.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.12.1e-34220276259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDg+nWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Dca26741.1 220 DDGFNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSL-DGQVTEIIYKGQHNHD 276
                 8****************************************.***************7 PP
2WRKY103.21.5e-32395453159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+Wr YGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  Dca26741.1 395 LDDGYRWRNYGQKVVKGNPYPRSYYKCTFTGCNVRKHVERAATDPKAVVTTYEGKHNHD 453
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-31205278IPR003657WRKY domain
SuperFamilySSF1182901.44E-26216278IPR003657WRKY domain
SMARTSM007741.0E-38219277IPR003657WRKY domain
PROSITE profilePS5081123.686220278IPR003657WRKY domain
PfamPF031063.1E-26220276IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-35381455IPR003657WRKY domain
SuperFamilySSF1182909.81E-29387455IPR003657WRKY domain
PROSITE profilePS5081137.493390455IPR003657WRKY domain
SMARTSM007744.5E-37395454IPR003657WRKY domain
PfamPF031063.4E-25396453IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MAENDTVSHP KPPPPQRPTL TLPPRSGMEA LFTGSGFGLS PGPMTLVSNF FADHDSESGF  60
GSFSQLLAGA MNSPRPPPPP PPPPPPQNGG ETGEFRFKQN RPADLVVGQS GPAQGQIGLF  120
MISPGLSPGP LLDSPGLFPG QALAQVTAQA QANLHMETGF QSSSGFLSAS APFPGFTSES  180
STQLSMITSA PESKEMKEPQ ISSSEQRSQL STVVVDKPAD DGFNWRKYGQ KQVKGSEFPR  240
SYYKCTHPSC PVKKKVERSL DGQVTEIIYK GQHNHDPPQK RSKDGGNSNK DLVPQGNAES  300
GVQAYSGVAN STSESMAFSS RRDQESSLAT EENLSSDDDE VDNTRTRESR GCEDEPDAKR  360
RNTEVRVSEQ PVAASQRTVS EPRIIVQTTS EVDLLDDGYR WRNYGQKVVK GNPYPRSYYK  420
CTFTGCNVRK HVERAATDPK AVVTTYEGKH NHDVPAARTS SHNTARSYSS AGTSTAAVSK  480
IDFTNNNNNS NQQPVALLRL KEERIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-41220456878Probable WRKY transcription factor 4
2lex_A1e-41220456878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839037.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-156WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0K9R3N80.0A0A0K9R3N8_SPIOL; Uncharacterized protein
STRINGXP_010683088.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-138WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]