PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca26831.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NF-YA
Protein Properties Length: 321aa    MW: 36170.2 Da    PI: 8.3709
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca26831.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA87.81.6e-27150205158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 d p+YVN+KQy++Il+RR++Rak     kl+++  kpylheSRh+hA+rRpRg gGrF
  Dca26831.1 150 DGPIYVNPKQYHGILRRRKMRAKEGL--KLKSAREKPYLHESRHRHACRRPRGVGGRF 205
                 57*********************998..777799***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.6E-29148208IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.019149208IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-23152205IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.1E-20152174IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.1E-20182205IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MNKSTINGQI PPFTTMPWWV SSGAQEGHVI QANISHIDWA EDHQKSVNFR KSQNVIDQSS  60
VKEKELVFHN IFSAGEVKNS FREINMPNHQ SNSFEQFSST QHKGYIELGL SQPTVYTNYP  120
LGDQSHGSFA AYGAQPMGRV MLPFCLTTED GPIYVNPKQY HGILRRRKMR AKEGLKLKSA  180
REKPYLHESR HRHACRRPRG VGGRFLNTKT LEDQKNNQDL KNASTNDQLL YHSSDSSASE  240
VLQSDSVNLN SSKEVSDTKT SNNPCTSEVS SLYYSKDFDC FNLNPARPFS FHPLATMEGS  300
GQAHGNPWVT ATDACCDFFK L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A8e-17150206260HAPB protein
4g92_A8e-17150206260HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189198RHRHACRRPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021758270.11e-122nuclear transcription factor Y subunit A-10-like
RefseqXP_021758271.11e-122nuclear transcription factor Y subunit A-10-like
RefseqXP_021758273.11e-122nuclear transcription factor Y subunit A-10-like
RefseqXP_021758274.11e-122nuclear transcription factor Y subunit A-10-like
TrEMBLA0A0K9RCB11e-119A0A0K9RCB1_SPIOL; Uncharacterized protein
STRINGXP_010695104.11e-117(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.16e-41nuclear factor Y, subunit A2