PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca26965.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 745aa    MW: 82018.2 Da    PI: 5.0455
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca26965.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72.1e-1895150156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F++n++p+ ++r+ L ++lgL+  q+k+WFqN+R+++k
  Dca26965.1  95 KKRYHRHTQHQIDEMEAFFKENQHPDDKQRKALGRELGLQPLQIKFWFQNKRTQMK 150
                 688999***********************************************998 PP
2START185.92.2e-582744933206
                 HHHHHHHHHHHHHH.C-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
       START   3 aeeaaqelvkkala.eepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                 a +a++el+++a+  +ep+W+ ++      +n+de++++f+++ v      + ea+r+s++v+m+  +lv +l+d++ qW+  +a    +a t++vis+
  Dca26965.1 274 AMAALEELLQMAQMgGEPLWTVDPdttsNVLNQDEYIRTFPKELVprmndLRAEASRESVAVIMNYLNLVDILMDVN-QWSIVFAgivsRAVTHDVIST 371
                 678999******962699*******99999**********99888********************************.********************* PP

                 T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
       START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                 g      g+lq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+ds ++        +++++pSg+li++++ng+skvtwvehv++ +  +h+
  Dca26965.1 372 GvagnydGVLQVMSAEYQVPSPLVPtRETYFVRYCKQQAEGTWAVVDVSLDSLRPGL----ANKCRKRPSGCLIQEMPNGYSKVTWVEHVEVYDGGVHN 466
                 *******************************************************97....48899********************************* PP

                 HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 180 llrslvksglaegaktwvatlqrqcek 206
                 ++ +lv+s+la+gak+wv+tl+rqce+
  Dca26965.1 467 MYLPLVHSTLAFGAKRWVSTLDRQCER 493
                 *************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-2181146IPR009057Homeodomain-like
SuperFamilySSF466899.19E-1883150IPR009057Homeodomain-like
PROSITE profilePS5007116.64992152IPR001356Homeobox domain
SMARTSM003891.3E-1693156IPR001356Homeobox domain
PfamPF000466.1E-1695150IPR001356Homeobox domain
CDDcd000863.15E-1795150No hitNo description
PROSITE profilePS5084833.082263496IPR002913START domain
SuperFamilySSF559613.74E-31264494No hitNo description
CDDcd088751.39E-115267492No hitNo description
SMARTSM002341.2E-51272493IPR002913START domain
PfamPF018528.9E-49274493IPR002913START domain
SuperFamilySSF559617.91E-25512735No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MPSVMGMNGG DLGCGFGSSS RLTIGQMMFP QTLMNNGQLN NLDIPQPLSD GELPQHEDYF  60
ETKSESDNNN IDPTFTGVEG EGEEQDPNQR PAKKKKRYHR HTQHQIDEME AFFKENQHPD  120
DKQRKALGRE LGLQPLQIKF WFQNKRTQMK MQIERHENSQ LRAENDKLRA DNMRYRDALA  180
NASCPNCGGP AALGDMSYDE HSLRLENARL REEVDRISAI AAEYVGKPAN YALMPPAQLP  240
SPRHLDMGPA TDHLLRSISA PINDMEKPVI IDLAMAALEE LLQMAQMGGE PLWTVDPDTT  300
SNVLNQDEYI RTFPKELVPR MNDLRAEASR ESVAVIMNYL NLVDILMDVN QWSIVFAGIV  360
SRAVTHDVIS TGVAGNYDGV LQVMSAEYQV PSPLVPTRET YFVRYCKQQA EGTWAVVDVS  420
LDSLRPGLAN KCRKRPSGCL IQEMPNGYSK VTWVEHVEVY DGGVHNMYLP LVHSTLAFGA  480
KRWVSTLDRQ CERLACVMAS NIPGEVGVIT CPEGRKSMLK LAERMVLSFC SGVSASTAHT  540
WTTLSGSGAD DVRVMTRKSI DDPGRPPGIV LCAATSFWLP LPPPKVFEFL RDENTRCEWD  600
ILSNGGGVQE MAHIANGKDT GNCVSLLRVI NANSTQSNML ILQESCTDPT ASYVIYAPVD  660
IVAMNVVLNG GDPDYVALLP SGFAILPDGP PNNGSGSLVT VAFQILVDSV PTAKLSLGSV  720
ATVNNLITCT VDRIKATLAD QTHLA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524172.20.0homeobox-leucine zipper protein HDG2 isoform X3
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLV4W4610.0V4W461_9ROSI; Uncharacterized protein
STRINGXP_006469695.10.0(Citrus sinensis)
STRINGXP_006447537.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2