PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca27034.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 117aa    MW: 13649.2 Da    PI: 8.9047
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca27034.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.11.2e-0744106769
        FAR1   7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 
                 A e GF ++k+++ k+ +++ e   + f+Cs++g++++  +  +k +++  +++++C+ +++  
  Dca27034.1  44 AFENGFALVKATNGKKnRKQPELLASYFRCSRHGRSKSVYDP-DKPKKKPRTQKCDCDFRVRAV 106
                 7789***999888766488899*************9999888.555555566677776665543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-543105IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MSDVDSVDSF EDFRGDDVDY NPLFVTKVCF KDRDEAFDWA NNVAFENGFA LVKATNGKKN  60
RKQPELLASY FRCSRHGRSK SVYDPDKPKK KPRTQKCDCD FRVRAVQNYR SIDSKYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18692KPKKKPR
28793PKKKPRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-