PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca2714.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 412aa    MW: 44944.9 Da    PI: 4.9652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca2714.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-13208259155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ +  Lr+l+P++   + ++ + a+i   A+e++++L+
  Dca2714.1 208 QRMTHIAVERNRRKQMNEHLRVLRSLMPSS---YVQRGDQASIIGGAIEFVRELE 259
                79****************************...9*****************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.28E-13206263No hitNo description
Gene3DG3DSA:4.10.280.107.1E-14206262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288207258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16207274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10208259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-9213264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MFETNHSNVM PSEMPAVDRT LSFADVMQFA DFGPKLSLNY SQIHQNNHTE NIINTTDNNN  60
NIISRNEQDN ITPTGVVDPV YFLKFPVLSN NDNDNNFEGG FGGGLEDIRG REFSFSHHEN  120
EQDGGACGSD YNNPVQLEFL GDAAAAADAG GGNNNTTDEN VVDISGDRFG GTEDAVAGGG  180
GMIVGKSGSS SKRKRPRTVK TTEEVESQRM THIAVERNRR KQMNEHLRVL RSLMPSSYVQ  240
RGDQASIIGG AIEFVRELEQ LLQCLESQKR RRLYGDQPGP GPGPARPPSP STMGLVVPQQ  300
PQHQHPLGFP PSTASNQSQD GEQQLHAAMD PLDPIGGGNG LLLQEDCAES KSCIADVEVK  360
VLGFDALIKI LSRRRHGQLL KAIAALEDLQ LTILHTNITT IEQTVLYSFN VK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208219RMTHIAVERNRR
2268272KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021750618.11e-133transcription factor FAMA-like isoform X2
TrEMBLA0A0J8BDA01e-120A0A0J8BDA0_BETVU; Uncharacterized protein
STRINGXP_010694945.11e-121(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.12e-69bHLH family protein