PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca27428.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bZIP

Protein Properties

Length: 408aa MW: 43574.3 Da PI: 6.8148

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca27428.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	61	2.3e-19	273	335	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+R++ae eeL +kv++L aeN aLk+e+++ ++++kl+ e+ Dca27428.1 273 ERELKRERRKQSNRESARRSRLRRQAEAEELGRKVDSLNAENLALKSEISQFVENSKKLRLEN 335 89*********************************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	9.4E-35	1	94	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	4.6E-23	127	247	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-12	266	332	No hit	No description
SMART	SM00338	1.7E-16	273	337	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-18	273	335	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.426	275	338	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.88E-9	276	331	No hit	No description
CDD	cd14702	2.96E-17	278	322	No hit	No description
PROSITE pattern	PS00036	0	280	295	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MGGSDDGESS KSDKSSPPAT GTEQNNVHVY PDWAAMQAYY GPRVAMPSYY NPSVASGHLP 60 PPYMWGPQPM MSPYGTPYAA IYAAGGVYAH PAVPLGTPAH GQGAVNEPLT ATPLSIDTPV 120 KSPPNTDKGL MKKLKGFDGL AMSIGNPGVE PKVEGSAENR MSQSAETEGS SDGSDGNSEQ 180 ADKKKRKRCQ ERTSSEGEGE QAESKTPRPV TDKVLGLPFN PANAAAGHVM GTVAPSVSTA 240 LELLNPAVDV KPNSTTVSSS NTVVSSEVWI QNERELKRER RKQSNRESAR RSRLRRQAEA 300 EELGRKVDSL NAENLALKSE ISQFVENSKK LRLENTALLE KLKSLQSEDE ENAVDVKINP 360 TDSTENLLSR VNNSGSVSRS TEEGKKSGGS KFHQLLSSKP RADAVAAG

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MGGSDDGESS KSDKSSPPAT GTEQNNVHVY PDWAAMQAYY GPRVAMPSYY NPSVASGHLP  60
PPYMWGPQPM MSPYGTPYAA IYAAGGVYAH PAVPLGTPAH GQGAVNEPLT ATPLSIDTPV  120
KSPPNTDKGL MKKLKGFDGL AMSIGNPGVE PKVEGSAENR MSQSAETEGS SDGSDGNSEQ  180
ADKKKRKRCQ ERTSSEGEGE QAESKTPRPV TDKVLGLPFN PANAAAGHVM GTVAPSVSTA  240
LELLNPAVDV KPNSTTVSSS NTVVSSEVWI QNERELKRER RKQSNRESAR RSRLRRQAEA  300
EELGRKVDSL NAENLALKSE ISQFVENSKK LRLENTALLE KLKSLQSEDE ENAVDVKINP  360
TDSTENLLSR VNNSGSVSRS TEEGKKSGGS KFHQLLSSKP RADAVAAG

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8672884}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00318	DAP	Transfer from AT2G46270	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021760367.1	1e-174	common plant regulatory factor 1-like
Swissprot	P42776	1e-118	GBF3_ARATH; G-box-binding factor 3
TrEMBL	O49936	1e-169	O49936_SPIOL; Basic leucine zipper protein
STRING	XP_010669464.1	1e-162	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.1	2e-75	G-box binding factor 3

Publications ? help Back to Top
Obayashi T, et al. ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res., 2007. 35(Database issue): p. D863-9 [PMID:17130150] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Ramegowda V, et al. GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 9148 [PMID:28831141]