PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca27570.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family M-type_MADS
Protein Properties Length: 102aa    MW: 11658.6 Da    PI: 10.256
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca27570.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.21e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +ri+n++ rqvtfskRr+g+lKKA+ELS+LCda+v v+ifsst klyeys+
  Dca27570.1  9 ERIDNTISRQVTFSKRRKGLLKKAKELSILCDAQVGVVIFSSTSKLYEYST 59
                69***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.5E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.744161IPR002100Transcription factor, MADS-box
CDDcd002651.23E-38277No hitNo description
SuperFamilySSF554552.88E-32285IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-26323IPR002100Transcription factor, MADS-box
PfamPF003199.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MGRGKMVIER IDNTISRQVT FSKRRKGLLK KAKELSILCD AQVGVVIFSS TSKLYEYSTS  60
SMKAVMDRYT KSKEADQVQL HSESQLKFCY NIDKGVNQFI LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-21183183MEF2C
5f28_B1e-21183183MEF2C
5f28_C1e-21183183MEF2C
5f28_D1e-21183183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021837971.13e-41MADS-box transcription factor 23-like isoform X1
RefseqXP_021837972.13e-41MADS-box transcription factor 23-like isoform X1
RefseqXP_021837973.13e-41MADS-box transcription factor 23-like isoform X2
SwissprotQ6EP496e-38MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0R0LEE63e-38A0A0R0LEE6_SOYBN; Uncharacterized protein
TrEMBLK7U1A33e-38K7U1A3_MAIZE; MADS transcription factor (Fragment)
STRINGXP_010683047.15e-40(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.16e-40AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]