PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca27706.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 357aa    MW: 41150.4 Da    PI: 6.1914
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca27706.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05198217120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 + C++C+k+F+r  n++ H+
  Dca27706.1 198 FACSICSKTFNRYNNMQMHM 217
                 78*****************9 PP
2zf-C2H211.10.0013284304323
                 ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                 C +C+k F  k + ++H +++
  Dca27706.1 284 CRKCSKAFAVKGDWRTHEKNC 304
                 *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-5186221No hitNo description
PROSITE profilePS5015710.741198225IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-5198217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17198220IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
SMARTSM00355240245277IPR015880Zinc finger, C2H2-like
SMARTSM00355120282302IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTIMMDYLPL FYKHHQNEDD DEEEDGSRET MTTLPLLSRF SSEARAIKEE DEGNNNNYKD  60
NEDNSRVTIT LHIGLPNNIN YSTNNNSGIN DNNTTNYHNQ EYTNYDYDDV DDDVVEVKPN  120
LSLLLEEEEE EEEKKENMMM MINNDNHKEI TSYNMDYDYS SSSSSINNNN NNNNINNNND  180
CRFWIPTQAQ ILVGPMQFAC SICSKTFNRY NNMQMHMWGH GSEYRKGAQS LKGTQPAAML  240
RLPCYCCAQG CKNNINHPRA KPLKDFRTLQ THFKRKHGIK GFLCRKCSKA FAVKGDWRTH  300
EKNCGKLWYC TCGSDFKHKR SLKDHIRSFG KGHSPHPSMS GFEHETGCVT TGSEGDS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021716386.11e-157zinc finger protein WIP3-like
SwissprotQ9SGD11e-110ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0K9RYT41e-140A0A0K9RYT4_SPIOL; Uncharacterized protein
STRINGXP_010686027.11e-145(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-110WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]