PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca27707.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 753aa MW: 87594.8 Da PI: 6.7242

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca27707.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.2	7.7e-25	28	114	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Y+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+l+vkk+ +gkw+ +k+++eHnHel p Dca27707.1 28 EYYREYAKSVGFGTAKLSSRRSRSSKEFIDAKFSCIRYGSKQQSDDA----VNPRPSPKIGCKASLHVKKKPNGKWYAYKFVKEHNHELLP 114 69**************************************99887....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-22	28	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.4E-28	227	320	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.916	507	543	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-6	511	541	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.7E-8	518	545	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence Send to blast
MESTIVANNG DLDHFTEMEF ESHETAYEYY REYAKSVGFG TAKLSSRRSR SSKEFIDAKF 60 SCIRYGSKQQ SDDAVNPRPS PKIGCKASLH VKKKPNGKWY AYKFVKEHNH ELLPEQAHFF 120 RSHRIFDPLK NDVRVRGRKI LASFSQQFCT YQNFGCSENY IRTQHDKGQT LTLEPGDAKK 180 LLDLFMQMQE DDPKFFYAVD FNEEQRLRNV FWVDTKGLTD YTYFSDVVSI DTTYFTNKYK 240 VPLVLFVGVN HHIQPTLLGC ALIGDGTVYT FLWLLQSWLI AIGGRSPSVL LTDENKALRT 300 AIAEVMPESR HFFCLWHILE KIPKWLESIN VFLDDFMKKF TKCIYRSWTE EKFEKRWWKL 360 VEKFKLQHDE WLRSIYDARV HWVPVFVRGI SLAGLSTSSR TDSVNSYFDK FIDTETSVNE 420 FLEQYKALLE NRFEEEAKAE YEAWHEAPEL KSPSPFEKQM AWVYTHEVFK KFQVEVLGAA 480 ACHLKKENED INSVTYTVKD FEKSQEFTVE WNESNADISC MCRLFEYQGY LCRHAIVVLQ 540 MSGVFSIPYK YILQRWTNAA WSRHIMNEKL DEVQAKVRRY NDLCRRAIIL AEEGSLSTES 600 YTAAVSAIRS AFQQCTGVNS SFEKDLRPDS FFIYSNNVED DVQVSHSRSS IRYPSCTGVE 660 EACASSRRLE DGNEVVDGGI NVNARTRGPP LNQDVAAVEP QSCFTQMETQ NTRPAHLHNM 720 FPVHYHNVVP NMFQGTTPAQ FHNTTWHEKH LQD

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence Send to blast

MESTIVANNG DLDHFTEMEF ESHETAYEYY REYAKSVGFG TAKLSSRRSR SSKEFIDAKF  60
SCIRYGSKQQ SDDAVNPRPS PKIGCKASLH VKKKPNGKWY AYKFVKEHNH ELLPEQAHFF  120
RSHRIFDPLK NDVRVRGRKI LASFSQQFCT YQNFGCSENY IRTQHDKGQT LTLEPGDAKK  180
LLDLFMQMQE DDPKFFYAVD FNEEQRLRNV FWVDTKGLTD YTYFSDVVSI DTTYFTNKYK  240
VPLVLFVGVN HHIQPTLLGC ALIGDGTVYT FLWLLQSWLI AIGGRSPSVL LTDENKALRT  300
AIAEVMPESR HFFCLWHILE KIPKWLESIN VFLDDFMKKF TKCIYRSWTE EKFEKRWWKL  360
VEKFKLQHDE WLRSIYDARV HWVPVFVRGI SLAGLSTSSR TDSVNSYFDK FIDTETSVNE  420
FLEQYKALLE NRFEEEAKAE YEAWHEAPEL KSPSPFEKQM AWVYTHEVFK KFQVEVLGAA  480
ACHLKKENED INSVTYTVKD FEKSQEFTVE WNESNADISC MCRLFEYQGY LCRHAIVVLQ  540
MSGVFSIPYK YILQRWTNAA WSRHIMNEKL DEVQAKVRRY NDLCRRAIIL AEEGSLSTES  600
YTAAVSAIRS AFQQCTGVNS SFEKDLRPDS FFIYSNNVED DVQVSHSRSS IRYPSCTGVE  660
EACASSRRLE DGNEVVDGGI NVNARTRGPP LNQDVAAVEP QSCFTQMETQ NTRPAHLHNM  720
FPVHYHNVVP NMFQGTTPAQ FHNTTWHEKH LQD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021863920.1	0.0	protein FAR1-RELATED SEQUENCE 4-like isoform X1
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A2R6QTS7	0.0	A0A2R6QTS7_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	XP_010686028.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]