PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca27977.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family CO-like
Protein Properties Length: 318aa    MW: 35407.4 Da    PI: 5.887
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca27977.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box33.21e-101257342
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 ++C+ +++ ++ +fC+ ++  lC +C   +H+       H +vp+
  Dca27977.1 12 VWVCEACDRAPAAFFCKADSASLCVTCDADIHSAnplarrHHRVPI 57
                689*****************************66899999877775 PP
2CCT713e-24248291144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Dca27977.1 248 REARVMRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 291
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.7461057IPR000315B-box-type zinc finger
SMARTSM003367.4E-171057IPR000315B-box-type zinc finger
PfamPF006431.2E-81157IPR000315B-box-type zinc finger
CDDcd000214.66E-111357No hitNo description
PROSITE profilePS5101716.747248290IPR010402CCT domain
PfamPF062032.9E-18248290IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MLKQEVSSQE RVWVCEACDR APAAFFCKAD SASLCVTCDA DIHSANPLAR RHHRVPIYGH  60
PTGVMSGDGF LGDDTTDEDE AASWLLLNPP ASGKTDCNNQ NTGNNGLLPG EEVDEYLDLF  120
EYNSGASDNH YCEPFNEQKQ VLSVAADKSC GGDSVVPVQC DEGKHQHHHH IHFQNFLYDM  180
ECDPKSGYNY NSFVPHTVSG SSMDVGVVPE SSTMSDMSMS HPRPSKGTID LFTNPPIQVP  240
TQLSPLDREA RVMRYREKKK NRKFEKTIRY ASRKAYAETR PRIKGRFAKR TDVEADVVDQ  300
MYSRGITADT GYGIVPSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021739343.11e-147zinc finger protein CONSTANS-LIKE 2-like isoform X1
SwissprotQ965025e-89COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLB3TZZ71e-139B3TZZ7_BETVU; COL1
STRINGXP_010694604.11e-140(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.15e-91CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]