PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca28099.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family AP2
Protein Properties Length: 497aa    MW: 55185.8 Da    PI: 7.1515
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca28099.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.81e-11169225155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Dca28099.1 169 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 225
                 57*******************5444.2455536655.779999**************98 PP
2AP247.35.1e-15268319155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Dca28099.1 268 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 319
                 57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.64E-15169235IPR016177DNA-binding domain
CDDcd000184.25E-19169235No hitNo description
PfamPF008473.5E-9169225IPR001471AP2/ERF domain
PROSITE profilePS5103217.477170233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-12170234IPR001471AP2/ERF domain
SMARTSM003802.3E-23170239IPR001471AP2/ERF domain
PRINTSPR003672.5E-6171182IPR001471AP2/ERF domain
CDDcd000181.80E-25268329No hitNo description
SuperFamilySSF541717.19E-18268329IPR016177DNA-binding domain
PfamPF008476.3E-10268319IPR001471AP2/ERF domain
PROSITE profilePS5103219.045269327IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-18269327IPR001471AP2/ERF domain
SMARTSM003801.9E-33269333IPR001471AP2/ERF domain
PRINTSPR003672.5E-6309329IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDSCDEQDDQ SWLTFSLSNQ NYYAGPPPPP PTTSHPHYHH NFSLFQHHPL SPGEVGQPVD  60
NGANTHQHHE LPFLGVSGGL LQAGLFPAVT VAADGCGIVY EAAPDQKTVE ASFLGGFSCE  120
QQVQQQPQQQ QQQQRIIQND AHNQQQLALV ASSTISNKKG AEGFGHRTSI YRGVTRHRWT  180
GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA LKYWGPTTTT NFPLSDYEKE  240
LEEMKNMSRQ EFVASLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF  300
STQEEAAEAY DIAAIKFRGL NAVTNFDISR YDLNSIISSN LPVGGMSNKA KSISGNTSDD  360
IKPLDTIKSN GQDFSTAFPL LPPSLNFAIP NKPLTSSQNY EIPALGTFDQ SQQSKSIGYD  420
LGYSNDGVSQ GYNGNYCHEG RNDNDEGVTV TKYRSHVEVD NQLVDTRYKS IALIAVICDK  480
SWKNDINIDR KLTSKNG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688479.11e-159PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-125AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2P5YPU41e-136A0A2P5YPU4_GOSBA; Uncharacterized protein
STRINGXP_010688479.11e-159(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-122AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]