PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca28435.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family M-type_MADS
Protein Properties Length: 195aa    MW: 21958.4 Da    PI: 4.6188
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca28435.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.47.8e-1327531642
                HHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF 16 RrngilKKAeELSvLCdaevaviifss 42
                R+++i+KKA+ELS LC+++vavi++ +
  Dca28435.1 27 RKTTIFKKAKELSSLCGVDVAVILYDH 53
                9**********************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-4563IPR002100Transcription factor, MADS-box
PfamPF003191.3E-102759IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.4752751IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-112781IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MKQAMMKKTG ENDDDVRKRD KLNKNLRKTT IFKKAKELSS LCGVDVAVIL YDHGEQNPQT  60
WSSQLGNFAV VNQYLSLNNQ EAFEKGKRSS LSWGRSCQPN IVIEDESRVL RDRQFIDSLG  120
MNELNRFASL LAGKIEGLNQ RINTLRGSVS SQYDDSQLAS LGDADLNLDD LEFTFDSLDG  180
FDFDDLGFGE KSSND
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.18e-08M-type_MADS family protein