PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca28507.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 827aa    MW: 90035.7 Da    PI: 6.5998
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca28507.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-1845102457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                   ++t+eq+e+Le++++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  Dca28507.1  45 YVRYTTEQVEALERVYAECPKPTSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 102
                 5789****************************************************97 PP
2bZIP_120.11.4e-06961411863
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 rr+R++ k+e  +L++   +L+a Nk L +e+++l+k+v++l +e+
  Dca28507.1  96 RRCREKQKKESSRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVNEN 141
                 9****************************************98876 PP
3START165.92.9e-521833872204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++ + +f+ s+ +sg a+ra+g+v  +++   +e+l+d++ W + +++ e+  vi  g  g+++l++++ 
  Dca28507.1 183 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDAVGIFAISHRCSGVAARACGLVSLEPT-KIAEILKDRPSWFRECRSLEVFTVIPAGtgGTIELIYTQI 280
                 7899******************************************************.7777777777****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktw 196
                 +a+++l+p Rdf+++Ry+ +l+ g+ v++++S++   +++  ++++Rae+lpSg+li+p+++g+s v++v+h +l++++++++lr+l++s+ a ++k++
  Dca28507.1 281 YAPTTLAPaRDFWTLRYTTTLENGSIVVCERSLSGSGPNTAAPQFIRAEMLPSGYLIRPCEGGGSIVHIVDHLNLEAWSVPEVLRPLYQSSKAVAQKMT 379
                 **************************************999********************************************************** PP

                 HHHTXXXX CS
       START 197 vatlqrqc 204
                  a+l++ +
  Dca28507.1 380 IAALHYIR 387
                 ****9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-1831102IPR009057Homeodomain-like
PROSITE profilePS5007115.46739103IPR001356Homeobox domain
SMARTSM003895.2E-1541107IPR001356Homeobox domain
SuperFamilySSF466897.27E-1643105IPR009057Homeodomain-like
CDDcd000864.23E-1644104No hitNo description
PfamPF000461.3E-1545102IPR001356Homeobox domain
CDDcd146861.89E-696135No hitNo description
PROSITE profilePS5084825.192173398IPR002913START domain
CDDcd088755.38E-70177390No hitNo description
SMARTSM002342.6E-44182389IPR002913START domain
Gene3DG3DSA:3.30.530.201.8E-20182365IPR023393START-like domain
SuperFamilySSF559611.0E-34183391No hitNo description
PfamPF018521.0E-49183387IPR002913START domain
PfamPF086707.4E-50683826IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MATMAMQYRE SSSGSSGGGG GGDGGFRRMN KQMAASTSGA DAGKYVRYTT EQVEALERVY  60
AECPKPTSLR RQQLIRECPI LSNIEPKQIK VWFQNRRCRE KQKKESSRLQ TVNRKLSAMN  120
KLLMEENDRL QKQVSQLVNE NGFMRQHLQT APNMATDGSC ESVVTTSQHC GRDPNSPAGL  180
LTIAEETLAE FLSKATGTAV DWVQMPGMKP GPDAVGIFAI SHRCSGVAAR ACGLVSLEPT  240
KIAEILKDRP SWFRECRSLE VFTVIPAGTG GTIELIYTQI YAPTTLAPAR DFWTLRYTTT  300
LENGSIVVCE RSLSGSGPNT AAPQFIRAEM LPSGYLIRPC EGGGSIVHIV DHLNLEAWSV  360
PEVLRPLYQS SKAVAQKMTI AALHYIRQIA QETSGEVVYG LGRQPAVLRT FSQRISRGFN  420
EAINGFTDDG WTLLNCDGAE DVIIACNSAK TFMATLNGAN SLRFVGGVLC AKASMLLQNV  480
PPAVLVRFLR EHRSEWADFS VDAYSAAALK ANSYAFPGLR STRFSGSQII MPLGHTVEHE  540
EICRGIDENA VGACAELVFA PIDEMFPDDA PLLPSGFRII PLDSKSDNAS NRTLDLTSSL  600
DVGPSTNQGA SDGTTSDSTR SVLTIAFQLP FESNLQENVA TMARQYVRSV ISSVQRVSMA  660
ITPSGLTPTV GPKLSPASPE ALTLAHWICQ SYSCHMGTDL LQTSSATDET VLKHLWHHQD  720
AILCCSLKAL PVLIFANQAG LDMLETTLVS LQDVSLDKIF DDSGRKSLCA EFPKIMQQGF  780
ACLPAGICMS TMGRHVSFDQ AIAWKVLAAD ETTVHCLAFT FVNWSFM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689538.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A0K9QZ930.0A0A0K9QZ93_SPIOL; Uncharacterized protein
STRINGXP_010689538.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]