PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca28669.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family TALE
Protein Properties Length: 195aa    MW: 22293.1 Da    PI: 6.5192
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca28669.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.52.3e-081451782154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp++e++++L +++gL+ +q+ +WF N+R +
  Dca28669.1 145 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 178
                 469*****************************87 PP
2ELK30.21e-1099120122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+++Y+++++++++E++
  Dca28669.1  99 ELKHELKQGYKEKIVDIREEIL 120
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012564.6E-13141IPR005541KNOX2
PfamPF037918.6E-13240IPR005541KNOX2
PfamPF037893.6E-799120IPR005539ELK domain
PROSITE profilePS512139.96999119IPR005539ELK domain
SMARTSM011886.1E-499120IPR005539ELK domain
PROSITE profilePS5007111.726119182IPR001356Homeobox domain
SMARTSM003892.4E-11121186IPR001356Homeobox domain
SuperFamilySSF466898.55E-17121185IPR009057Homeodomain-like
CDDcd000861.80E-11122183No hitNo description
Gene3DG3DSA:1.10.10.609.5E-26126183IPR009057Homeodomain-like
PfamPF059203.8E-18139178IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
THYVLLLCSF KEQLQQHVRV HAMEAVMACW EIEQSLQSLT GVSPGEGTGA TMSDDDEDDP  60
IDGDSNLFDG SLDGADTMGF GPLIPTESER SLMERVRQEL KHELKQGYKE KIVDIREEIL  120
RKRRAGKLPG DTTSVLKAWW QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW  180
HSNPSSSTAV KSKRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-13122186872Homeobox protein PKNOX1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862211.11e-136homeobox protein knotted-1-like 2
SwissprotP480001e-127KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0K9R9E21e-135A0A0K9R9E2_SPIOL; Uncharacterized protein
STRINGVIT_04s0008g06130.t011e-134(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-124KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]